Variant report

Variant	rs7927790
Chromosome Location	chr11:65671269-65671270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr11:65670401-65671273	SK-N-SH	brain:	n/a	n/a
2	MAX	chr11:65670291-65671281	A549	lung:	n/a	chr11:65670478-65670488
3	POLR2A	chr11:65669194-65671270	U87	brain:	n/a	n/a
4	JUND	chr11:65670408-65671517	SK-N-SH	brain:	n/a	n/a
5	POLR2A	chr11:65669294-65671270	U87	brain:	n/a	n/a
6	MAX	chr11:65670354-65671634	HCT-116	colon:	n/a	chr11:65670478-65670488
7	POLR2A	chr11:65670203-65671448	PANC-1	pancreas:	n/a	n/a
8	JUND	chr11:65670449-65671278	SK-N-SH	brain:	n/a	n/a
9	TCF7L2	chr11:65670549-65671585	HCT-116	colon:	n/a	n/a
10	GATA3	chr11:65670334-65671449	A549	lung:	n/a	chr11:65670729-65670739
11	MAZ	chr11:65670349-65671322	IMR90	lung:	n/a	n/a
12	JUN	chr11:65670377-65671356	K562	blood:	n/a	chr11:65670843-65670856
13	EP300	chr11:65670372-65671297	ECC-1	luminal epithelium:	n/a	n/a
14	JUND	chr11:65670355-65671270	HCT-116	colon:	n/a	n/a
15	POLR2A	chr11:65654850-65671347	PANC-1	pancreas:	n/a	n/a
16	TCF7L2	chr11:65670437-65671680	PANC-1	pancreas:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65667930..65670445-chr11:65670450..65672098,2	MCF-7	breast:

Variant related genes	Relation type
FOSL1	TF binding region
ENSG00000175592	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10791831	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10896065	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9326357	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
2	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
3	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
7	nsv555215	chr11:65581579-65676516	Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
8	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
9	nsv897764	chr11:65613348-65695222	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
10	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
11	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
12	nsv39194	chr11:65665530-65672457	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65668000-65682600	Weak transcription	Aorta	Aorta
2	chr11:65668200-65672000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:65668200-65672800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:65668400-65671400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:65668400-65671400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:65668400-65671400	Enhancers	K562	blood
7	chr11:65668400-65671600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:65668400-65671800	Enhancers	NHDF-Ad	bronchial
9	chr11:65668400-65672000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:65668400-65672600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:65668600-65671600	Enhancers	HMEC	breast
12	chr11:65668600-65671600	Enhancers	NH-A	brain
13	chr11:65668600-65671600	Enhancers	Osteobl	bone
14	chr11:65668600-65671800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:65668800-65671600	Enhancers	NHEK	skin
16	chr11:65669000-65671400	Enhancers	Fetal Thymus	thymus
17	chr11:65669000-65671600	Enhancers	NHLF	lung
18	chr11:65669400-65671400	Enhancers	HUVEC	blood vessel
19	chr11:65669800-65671400	Enhancers	Primary hematopoietic stem cells	blood
20	chr11:65669800-65671600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:65670000-65671800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:65670400-65671400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr11:65670400-65671400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:65670400-65671400	Flanking Active TSS	Hela-S3	cervix
25	chr11:65670600-65671400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:65670600-65671400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:65670800-65671400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:65670800-65671400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr11:65671000-65671400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:65671000-65671600	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr11:65671000-65671600	Enhancers	HepG2	liver
32	chr11:65671000-65671800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:65671000-65671800	Enhancers	HSMM	muscle
34	chr11:65671000-65672200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:65671200-65671400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
36	chr11:65671200-65671600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:65671200-65671800	Enhancers	A549	lung
38	chr11:65671200-65678800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr11:65671200-65679000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:65671200-65679400	Weak transcription	HSMMtube	muscle

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