Variant report

Variant	rs7928086
Chromosome Location	chr11:83876074-83876075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7927822	0.93[AFR][1000 genomes]
rs7941748	1.00[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83868800-83884200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83873800-83876400	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:83875400-83876200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:83875600-83876400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:83875600-83876600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:83875800-83876200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:83875800-83876200	Enhancers	Brain Angular Gyrus	brain
8	chr11:83875800-83876400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:83875800-83877200	Enhancers	Brain Hippocampus Middle	brain
10	chr11:83875800-83884200	Weak transcription	Brain Substantia Nigra	brain
11	chr11:83876000-83876200	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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