Variant report

Variant	rs792839
Chromosome Location	chr3:99470347-99470348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs704570	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs704573	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs792828	0.82[AMR][1000 genomes]
rs792829	0.82[AMR][1000 genomes]
rs793489	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs793490	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs793491	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877217	chr3:99418950-99496351	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv508231	chr3:99442020-99498951	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs792839	FILIP1L	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99440400-99471000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:99443400-99471400	Weak transcription	Aorta	Aorta
3	chr3:99458600-99471000	Weak transcription	NHLF	lung
4	chr3:99458600-99471200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:99458600-99472200	Weak transcription	Adipose Nuclei	Adipose
6	chr3:99462400-99495600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:99464200-99471400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:99467000-99471200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:99467200-99471000	Weak transcription	NH-A	brain
10	chr3:99467600-99471200	Weak transcription	HMEC	breast
11	chr3:99467800-99472000	Weak transcription	HSMMtube	muscle
12	chr3:99469200-99471800	Enhancers	HUVEC	blood vessel
13	chr3:99469400-99472400	Enhancers	NHDF-Ad	bronchial
14	chr3:99469400-99474600	Genic enhancers	Osteobl	bone
15	chr3:99469400-99478600	Genic enhancers	Muscle Satellite Cultured Cells	--
16	chr3:99469600-99472600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:99469600-99472800	Genic enhancers	HSMM	muscle
18	chr3:99469800-99470400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:99469800-99472400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:99470000-99470400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:99470000-99472400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:99470000-99472400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr3:99470000-99472400	Enhancers	NHEK	skin
24	chr3:99470200-99470400	Enhancers	Lung	lung
25	chr3:99470200-99472400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:99470200-99472400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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