Variant report

Variant	rs792842
Chromosome Location	chr3:99472133-99472134
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:99250812..99251418-chr3:99471853..99472489,2	MCF-7	breast:
2	chr3:99217180..99218833-chr3:99471535..99472845,8	MCF-7	breast:
3	chr3:98536189..98537072-chr3:99472125..99472692,2	K562	blood:
4	chr3:99363705..99364768-chr3:99471880..99472933,4	MCF-7	breast:
5	chr3:98833207..98833983-chr3:99472028..99472879,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000057019	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs793477	1.00[CEU][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877217	chr3:99418950-99496351	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv508231	chr3:99442020-99498951	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99458600-99472200	Weak transcription	Adipose Nuclei	Adipose
2	chr3:99462400-99495600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:99469400-99472400	Enhancers	NHDF-Ad	bronchial
4	chr3:99469400-99474600	Genic enhancers	Osteobl	bone
5	chr3:99469400-99478600	Genic enhancers	Muscle Satellite Cultured Cells	--
6	chr3:99469600-99472600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:99469600-99472800	Genic enhancers	HSMM	muscle
8	chr3:99469800-99472400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:99470000-99472400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:99470000-99472400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:99470000-99472400	Enhancers	NHEK	skin
12	chr3:99470200-99472400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:99470200-99472400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:99470400-99472400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:99470600-99472200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:99471000-99472400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:99471000-99472400	Enhancers	NHLF	lung
18	chr3:99471000-99472600	Enhancers	NH-A	brain
19	chr3:99471200-99472400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:99471200-99472400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:99471200-99472400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:99471200-99472400	Enhancers	HMEC	breast
23	chr3:99471400-99472400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:99471600-99474400	Weak transcription	Aorta	Aorta
25	chr3:99471800-99472400	Genic enhancers	HUVEC	blood vessel
26	chr3:99472000-99472400	Enhancers	Brain Anterior Caudate	brain
27	chr3:99472000-99472400	Enhancers	Fetal Heart	heart
28	chr3:99472000-99472400	Enhancers	Fetal Kidney	kidney
29	chr3:99472000-99472400	Enhancers	Left Ventricle	heart
30	chr3:99472000-99472400	Enhancers	Right Atrium	heart
31	chr3:99472000-99472400	Enhancers	HSMMtube	muscle

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