Variant report

Variant	rs7928453
Chromosome Location	chr11:64182811-64182812
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:64126488..64127016-chr11:64182265..64183106,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162302	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv3373822	chr11:64182426-64184924	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64178000-64184200	Weak transcription	Right Atrium	heart
2	chr11:64182200-64183000	Enhancers	Fetal Muscle Leg	muscle
3	chr11:64182200-64183800	Enhancers	Spleen	Spleen
4	chr11:64182400-64183000	Enhancers	Right Ventricle	heart
5	chr11:64182400-64183200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr11:64182400-64183200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:64182400-64183200	Enhancers	Fetal Heart	heart
8	chr11:64182400-64183400	Enhancers	Fetal Lung	lung
9	chr11:64182400-64183600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr11:64182400-64183600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:64182400-64183800	Enhancers	Placenta	Placenta
12	chr11:64182400-64184000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr11:64182400-64184000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:64182600-64183000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:64182600-64183000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:64182600-64183000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:64182600-64183000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:64182600-64183200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr11:64182600-64183200	Enhancers	Fetal Muscle Trunk	muscle
20	chr11:64182600-64183200	Enhancers	Fetal Thymus	thymus
21	chr11:64182600-64183400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:64182600-64183400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr11:64182600-64183400	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr11:64182600-64183400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr11:64182600-64183600	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr11:64182600-64183800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:64182800-64183200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:64182800-64183200	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr11:64182800-64196000	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links