Variant report

Variant	rs7928532
Chromosome Location	chr11:68230624-68230625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:68212103..68215938-chr11:68228494..68232397,5	K562	blood:
2	chr11:68179255..68181332-chr11:68230126..68231810,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162337	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7125902	0.88[AFR][1000 genomes]
rs7941318	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897857	chr11:68056770-68231240	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897858	chr11:68077238-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv897859	chr11:68102000-68231240	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv897860	chr11:68102000-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1047532	chr11:68103330-68239242	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv541082	chr11:68103330-68239242	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1036561	chr11:68123135-68315685	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv897862	chr11:68129606-68236389	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv555285	chr11:68144283-68231240	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv468618	chr11:68171013-68231240	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv897863	chr11:68186392-68251460	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
12	esv1792339	chr11:68199008-68299226	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	esv1803199	chr11:68199008-68299226	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
14	esv1842405	chr11:68199008-68299226	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	esv1796394	chr11:68227792-68236389	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68228600-68230800	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr11:68229000-68230800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:68229000-68230800	Flanking Active TSS	Fetal Brain Female	brain
4	chr11:68229000-68231400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
5	chr11:68229000-68231400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr11:68229000-68231600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:68229200-68230800	Flanking Active TSS	Duodenum Mucosa	Duodenum
8	chr11:68229200-68230800	Flanking Active TSS	Rectal Smooth Muscle	rectum
9	chr11:68229200-68230800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr11:68229200-68230800	Flanking Active TSS	HUVEC	blood vessel
11	chr11:68229200-68231200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr11:68229200-68231400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr11:68229400-68230800	Flanking Active TSS	Brain Germinal Matrix	brain
14	chr11:68229400-68233400	Enhancers	Spleen	Spleen
15	chr11:68229600-68230800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr11:68229600-68230800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr11:68229600-68230800	Active TSS	Left Ventricle	heart
18	chr11:68229600-68230800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr11:68229600-68230800	Flanking Active TSS	Hela-S3	cervix
20	chr11:68229600-68231400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:68229600-68231400	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr11:68229600-68231600	Enhancers	Placenta Amnion	Placenta Amnion
23	chr11:68229600-68232600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:68229800-68230800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:68229800-68230800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:68229800-68231000	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr11:68230000-68230800	Genic enhancers	Fetal Muscle Trunk	muscle
28	chr11:68230000-68231400	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr11:68230000-68232000	Enhancers	Primary B cells from peripheral blood	blood
30	chr11:68230200-68230800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:68230200-68231200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:68230200-68231400	Genic enhancers	Fetal Intestine Small	intestine
33	chr11:68230200-68231600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr11:68230200-68231600	Enhancers	Fetal Stomach	stomach
35	chr11:68230200-68231600	Weak transcription	Lung	lung
36	chr11:68230200-68231800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:68230400-68230800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr11:68230400-68230800	Active TSS	HUES6 Cell Line	embryonic stem cell
39	chr11:68230400-68230800	Enhancers	Primary B cells from cord blood	blood
40	chr11:68230400-68230800	Genic enhancers	Primary hematopoietic stem cells	blood
41	chr11:68230400-68230800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr11:68230400-68230800	Enhancers	Colonic Mucosa	Colon
43	chr11:68230400-68231200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:68230400-68231200	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr11:68230400-68231200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:68230400-68231200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:68230400-68231200	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr11:68230400-68231400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:68230400-68231400	Enhancers	Esophagus	oesophagus
50	chr11:68230400-68231400	Enhancers	Placenta	Placenta

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