Variant report

Variant	rs7928868
Chromosome Location	chr11:121165498-121165499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121120979..121124837-chr11:121162716..121167264,4	MCF-7	breast:
2	chr11:121135011..121137028-chr11:121164041..121166376,2	K562	blood:

Variant related genes	Relation type
ENSG00000244400	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12275106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17125142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55903632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56142837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7128433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs727422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7942396	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7950536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv898424	chr11:121108865-121206354	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv898425	chr11:121115206-121215237	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv898426	chr11:121136604-121206354	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121162600-121165600	Active TSS	Muscle Satellite Cultured Cells	--
2	chr11:121162600-121166400	Active TSS	H9 Cell Line	embryonic stem cell
3	chr11:121162800-121166800	Active TSS	GM12878-XiMat	blood
4	chr11:121163000-121166600	Active TSS	HSMMtube	muscle
5	chr11:121164000-121165600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:121164000-121181400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:121164200-121165800	Weak transcription	Gastric	stomach
8	chr11:121164200-121167000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:121164200-121171000	Weak transcription	Pancreas	Pancrea
10	chr11:121164200-121171400	Weak transcription	Small Intestine	intestine
11	chr11:121164200-121177200	Weak transcription	Placenta	Placenta
12	chr11:121164200-121179600	Weak transcription	Spleen	Spleen
13	chr11:121164200-121183000	Weak transcription	Esophagus	oesophagus
14	chr11:121164400-121166400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr11:121164400-121167000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:121164400-121167200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr11:121164400-121168800	Weak transcription	Left Ventricle	heart
18	chr11:121164400-121171000	Weak transcription	Ovary	ovary
19	chr11:121164400-121171000	Weak transcription	Psoas Muscle	Psoas
20	chr11:121164400-121171200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:121164400-121174600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr11:121164400-121174600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:121164400-121175000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr11:121164400-121177000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:121164400-121177400	Weak transcription	Lung	lung
26	chr11:121164400-121177600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr11:121164400-121179400	Weak transcription	Colonic Mucosa	Colon
28	chr11:121164400-121183000	Weak transcription	Fetal Stomach	stomach
29	chr11:121164600-121165800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:121164600-121165800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:121164600-121165800	Enhancers	Colon Smooth Muscle	Colon
32	chr11:121164600-121165800	Enhancers	Fetal Lung	lung
33	chr11:121164600-121165800	Flanking Active TSS	NHEK	skin
34	chr11:121164600-121166600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr11:121164600-121171000	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr11:121164600-121171000	Weak transcription	Right Ventricle	heart
37	chr11:121164600-121175000	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:121164600-121175000	Weak transcription	Fetal Thymus	thymus
39	chr11:121164600-121175400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:121164600-121177400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:121164600-121177600	Weak transcription	Aorta	Aorta
42	chr11:121164600-121180200	Weak transcription	K562	blood
43	chr11:121164800-121165600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr11:121164800-121165800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:121164800-121165800	Weak transcription	Right Atrium	heart
46	chr11:121164800-121166000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr11:121164800-121166200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:121164800-121166400	Enhancers	Brain Cingulate Gyrus	brain
49	chr11:121164800-121166400	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr11:121164800-121166600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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