Variant report

Variant	rs7929071
Chromosome Location	chr11:108769984-108769985
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108769970..108771676-chr11:108772383..108774669,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11821958	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108706	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108757	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108781	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7103452	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7940937	1.00[EUR][1000 genomes]
rs7950254	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9888148	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv2761707	chr11:108763836-108772204	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108728400-108810600	Weak transcription	Left Ventricle	heart
2	chr11:108763000-108797600	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:108766600-108775600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:108767000-108777200	Weak transcription	Adipose Nuclei	Adipose
5	chr11:108767600-108777000	Weak transcription	HSMM	muscle
6	chr11:108768000-108770000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:108768000-108776400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:108768000-108810600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:108768200-108771200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:108768200-108771400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:108768200-108772000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:108768200-108776400	Weak transcription	NHEK	skin
13	chr11:108768200-108777000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:108768200-108779800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:108768400-108772400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:108768400-108772600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:108768400-108773000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:108768600-108776200	Weak transcription	NH-A	brain
19	chr11:108769000-108791200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr11:108769200-108777000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:108769200-108777000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:108769200-108788600	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr11:108769400-108772800	Weak transcription	A549	lung
24	chr11:108769400-108780800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr11:108769800-108772800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:108769800-108776400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:108769800-108776400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:108769800-108789600	Weak transcription	Primary B cells from cord blood	blood

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