Variant report

Variant	rs7929738
Chromosome Location	chr11:57431067-57431068
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:57427400..57431333-chr11:57432768..57435307,4	MCF-7	breast:
2	chr11:57423642..57427041-chr11:57427345..57431533,5	K562	blood:
3	chr11:57430324..57432082-chr11:57433263..57435317,2	MCF-7	breast:
4	chr11:57427698..57431931-chr11:57435517..57438480,4	MCF-7	breast:
5	chr11:57297338..57300133-chr11:57430692..57432279,2	K562	blood:
6	chr11:57429293..57431231-chr11:57440462..57442351,2	K562	blood:

Variant related genes	Relation type
ENSG00000156599	Chromatin interaction
ENSG00000172409	Chromatin interaction
ENSG00000134809	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1783819	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv832163	chr11:57299354-57481050	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
6	nsv832164	chr11:57407617-57578825	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
7	nsv508633	chr11:57419585-57560045	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57426000-57434000	Weak transcription	Fetal Heart	heart
2	chr11:57426000-57434000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:57426000-57434200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:57426000-57434200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:57426400-57431400	Strong transcription	Fetal Stomach	stomach
6	chr11:57427000-57431200	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr11:57427000-57431200	Strong transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:57427000-57431800	Strong transcription	Fetal Brain Female	brain
9	chr11:57427200-57431400	Strong transcription	Duodenum Mucosa	Duodenum
10	chr11:57427400-57431400	Strong transcription	Lung	lung
11	chr11:57427400-57434000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:57427600-57434000	Weak transcription	NHDF-Ad	bronchial
13	chr11:57428400-57434000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:57428400-57434200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:57428800-57434000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:57428800-57434200	Weak transcription	Fetal Brain Male	brain
17	chr11:57429000-57433600	Weak transcription	Hela-S3	cervix
18	chr11:57429000-57433800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:57429000-57433800	Weak transcription	Pancreas	Pancrea
20	chr11:57429000-57434000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:57429000-57434000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:57429000-57434000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:57429000-57434000	Weak transcription	A549	lung
24	chr11:57429000-57434200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:57429000-57434200	Weak transcription	Aorta	Aorta
26	chr11:57429000-57434200	Weak transcription	Esophagus	oesophagus
27	chr11:57429000-57434200	Weak transcription	Left Ventricle	heart
28	chr11:57429000-57434400	Weak transcription	Gastric	stomach
29	chr11:57429000-57434400	Weak transcription	Small Intestine	intestine
30	chr11:57429200-57433600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:57429200-57433800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr11:57429200-57433800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:57429200-57433800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:57429200-57433800	Weak transcription	HepG2	liver
35	chr11:57429200-57434000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:57429200-57434000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr11:57429200-57434000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr11:57429200-57434000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr11:57429200-57434000	Weak transcription	Psoas Muscle	Psoas
40	chr11:57429200-57434000	Weak transcription	NH-A	brain
41	chr11:57429200-57434200	Weak transcription	Brain Substantia Nigra	brain
42	chr11:57429200-57434200	Weak transcription	Colonic Mucosa	Colon
43	chr11:57429400-57433800	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr11:57429400-57433800	Weak transcription	HMEC	breast
45	chr11:57429400-57434000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr11:57429400-57434000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr11:57429600-57434000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:57429600-57434200	Weak transcription	Ovary	ovary
49	chr11:57429800-57434000	Weak transcription	Fetal Intestine Small	intestine
50	chr11:57429800-57434000	Weak transcription	Right Ventricle	heart

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