Variant report

Variant	rs79298890
Chromosome Location	chr7:105318542-105318543
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr7:105317779-105319849	NB4	blood:	n/a	chr7:105319452-105319461
2	GATA1	chr7:105317655-105320231	PBDE	blood:	n/a	chr7:105318785-105318796 chr7:105318251-105318260 chr7:105318248-105318264 chr7:105318947-105318957
3	FOXP2	chr7:105318273-105318597	SK-N-MC	brain:	n/a	n/a
4	SMC3	chr7:105318510-105318674	GM12878	blood:	n/a	n/a
5	ZNF384	chr7:105318386-105318813	GM12878	blood:	n/a	n/a
6	ZNF384	chr7:105318382-105318636	K562	blood:	n/a	n/a
7	POLR2A	chr7:105317899-105319914	PBDE	blood:	n/a	n/a
8	POLR2A	chr7:105317264-105320036	HL-60	blood:	n/a	n/a
9	POLR2A	chr7:105318116-105318579	HL-60	blood:	n/a	n/a
10	RUNX3	chr7:105318282-105318637	GM12878	blood:	n/a	n/a
11	MAX	chr7:105317797-105319797	NB4	blood:	n/a	chr7:105319452-105319461
12	RUNX3	chr7:105318291-105318618	GM12878	blood:	n/a	n/a
13	POLR2A	chr7:105318215-105318600	Raji	blood:	n/a	n/a
14	EBF1	chr7:105318328-105318575	GM12878	blood:	n/a	n/a
15	REST	chr7:105318101-105319945	HL-60	blood:	n/a	chr7:105319306-105319316 chr7:105319824-105319834 chr7:105319790-105319797

Variant related genes	Relation type
ATXN7L1	TF binding region

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528739	chr7:105318058-105346117	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105280800-105319400	Weak transcription	Aorta	Aorta
2	chr7:105290400-105321800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:105302000-105319200	Weak transcription	Osteobl	bone
4	chr7:105302200-105319200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:105306200-105319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:105306200-105319400	Weak transcription	HSMMtube	muscle
7	chr7:105306200-105325200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:105306400-105319000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:105307800-105319200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:105311800-105319200	Weak transcription	HSMM	muscle
11	chr7:105313000-105318600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr7:105314200-105320600	Weak transcription	HepG2	liver
13	chr7:105314400-105318600	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:105314400-105318800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:105314400-105319000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:105314600-105318600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:105314600-105318600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:105314600-105318800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr7:105314600-105318800	Weak transcription	Small Intestine	intestine
20	chr7:105314600-105319400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:105315200-105318600	Weak transcription	Esophagus	oesophagus
22	chr7:105315200-105318800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:105315200-105318800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr7:105315200-105319400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:105315200-105320600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr7:105315200-105324200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:105315400-105318800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr7:105315800-105319400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr7:105315800-105319400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr7:105315800-105319400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr7:105315800-105319800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr7:105315800-105320000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr7:105315800-105323200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr7:105316000-105320000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr7:105316200-105319800	Flanking Active TSS	Fetal Thymus	thymus
36	chr7:105316400-105318600	Enhancers	Brain Substantia Nigra	brain
37	chr7:105316400-105318600	Genic enhancers	Stomach Smooth Muscle	stomach
38	chr7:105316400-105318800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr7:105316400-105318800	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr7:105316400-105319200	Enhancers	Placenta	Placenta
41	chr7:105316400-105319200	Enhancers	Left Ventricle	heart
42	chr7:105316400-105319200	Enhancers	Lung	lung
43	chr7:105316400-105319200	Enhancers	Pancreas	Pancrea
44	chr7:105316400-105319200	Enhancers	Spleen	Spleen
45	chr7:105316400-105320600	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr7:105316800-105319000	Weak transcription	Right Atrium	heart
47	chr7:105316800-105319200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr7:105316800-105319400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr7:105316800-105321000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr7:105317400-105318800	Enhancers	Brain Angular Gyrus	brain

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