Variant report

Variant	rs79304588
Chromosome Location	chr11:59384454-59384455
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr11:59382375-59384474	Hela-S3	cervix:	n/a	n/a
2	SREBP1	chr11:59382112-59385589	GM12878	blood:	n/a	n/a
3	JUN	chr11:59381851-59384464	K562	blood:	n/a	chr11:59382373-59382382 chr11:59381962-59381972 chr11:59381962-59381972 chr11:59381963-59381972 chr11:59383442-59383451 chr11:59383245-59383254 chr11:59381962-59381972
4	MXI1	chr11:59381803-59384654	SK-N-SH	brain:	n/a	n/a
5	POLR2A	chr11:59381764-59384454	HUVEC	blood vessel:	n/a	n/a
6	POLR2A	chr11:59382037-59384768	GM12878	blood:	n/a	n/a
7	POLR2A	chr11:59382109-59384724	PBDE	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:59313058..59315835-chr11:59384202..59386133,2	K562	blood:
2	chr11:59380013..59385486-chr11:59434648..59438262,9	MCF-7	breast:
3	chr11:59381725..59384642-chr11:59521273..59522941,2	K562	blood:
4	chr11:59379597..59385439-chr11:59434812..59438230,12	K562	blood:
5	chr11:59381899..59384726-chr11:59386703..59391439,4	MCF-7	breast:
6	chr11:59382734..59385576-chr11:59440781..59442919,2	K562	blood:
7	chr11:59324538..59326283-chr11:59383295..59385264,2	K562	blood:
8	chr11:59383955..59385521-chr11:59435044..59437957,2	MCF-7	breast:
9	chr11:59381143..59385193-chr11:59434975..59438411,10	K562	blood:
10	chr11:59352549..59354078-chr11:59384301..59386875,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STX3-2	chr11:59383619-59385512	NONHSAT021532

Variant related genes	Relation type
ENSG00000255139	TF binding region
OSBP	TF binding region
ENSG00000252893	Chromatin interaction
ENSG00000166889	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000166900	Chromatin interaction
ENSG00000254477	Chromatin interaction
ENSG00000255355	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3356175	chr11:59382001-59384549	Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv1797571	chr11:59383323-59424688	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1797737	chr11:59383323-59424688	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv1802782	chr11:59383323-59448068	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59381400-59384600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr11:59382200-59384600	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr11:59382200-59384800	Active TSS	A549	lung
4	chr11:59382400-59384600	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr11:59382400-59384600	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr11:59382400-59384600	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr11:59382400-59384600	Active TSS	Brain Anterior Caudate	brain
8	chr11:59382400-59384800	Active TSS	Thymus	Thymus
9	chr11:59382800-59384800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:59384000-59384600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:59384000-59384600	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr11:59384000-59384600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:59384000-59384600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:59384000-59384600	Flanking Active TSS	HMEC	breast
15	chr11:59384000-59384800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:59384000-59384800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr11:59384000-59384800	Flanking Active TSS	Dnd41	blood
18	chr11:59384000-59384800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr11:59384400-59384600	Enhancers	Pancreas	Pancrea
20	chr11:59384400-59384600	Enhancers	Hela-S3	cervix
21	chr11:59384400-59384600	Active TSS	K562	blood
22	chr11:59384400-59384600	Enhancers	NH-A	brain
23	chr11:59384400-59384800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:59384400-59384800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr11:59384400-59384800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:59384400-59384800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:59384400-59384800	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr11:59384400-59384800	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr11:59384400-59384800	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr11:59384400-59384800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:59384400-59384800	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr11:59384400-59384800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:59384400-59384800	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr11:59384400-59384800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr11:59384400-59384800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:59384400-59384800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:59384400-59384800	Enhancers	Liver	Liver
38	chr11:59384400-59384800	Enhancers	Brain Angular Gyrus	brain
39	chr11:59384400-59384800	Enhancers	Duodenum Mucosa	Duodenum
40	chr11:59384400-59384800	Enhancers	Fetal Heart	heart
41	chr11:59384400-59384800	Enhancers	Fetal Intestine Small	intestine
42	chr11:59384400-59384800	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr11:59384400-59384800	Enhancers	GM12878-XiMat	blood
44	chr11:59384400-59384800	Enhancers	NHDF-Ad	bronchial
45	chr11:59384400-59384800	Enhancers	NHEK	skin
46	chr11:59384400-59385000	Enhancers	Primary T cells from cord blood	blood
47	chr11:59384400-59385200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr11:59384400-59385200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:59384400-59385200	Enhancers	HepG2	liver
50	chr11:59384400-59385400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links