Variant report

Variant	rs7930664
Chromosome Location	chr11:45626736-45626737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1027102	0.83[EUR][1000 genomes]
rs1027105	0.85[EUR][1000 genomes]
rs1374752	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1488678	0.81[EUR][1000 genomes]
rs1488679	0.87[EUR][1000 genomes]
rs1488681	0.88[EUR][1000 genomes]
rs275586	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs275587	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs275588	0.88[EUR][1000 genomes]
rs275589	0.89[EUR][1000 genomes]
rs275590	0.87[EUR][1000 genomes]
rs275591	0.90[EUR][1000 genomes]
rs275592	0.90[EUR][1000 genomes]
rs275593	0.90[EUR][1000 genomes]
rs275594	0.90[EUR][1000 genomes]
rs275595	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs275599	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6485633	0.82[EUR][1000 genomes]
rs7396878	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45624800-45628600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:45624800-45628800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:45624800-45629400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:45625200-45626800	Enhancers	Brain Germinal Matrix	brain
5	chr11:45626000-45627800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:45626000-45628000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:45626200-45627800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:45626200-45627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:45626200-45628000	Weak transcription	Lung	lung
10	chr11:45626200-45629000	Enhancers	Fetal Brain Male	brain
11	chr11:45626400-45628000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:45626400-45629200	Weak transcription	Right Ventricle	heart
13	chr11:45626400-45629600	Weak transcription	Right Atrium	heart
14	chr11:45626600-45628400	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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