Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10792713	0.82[EUR][1000 genomes]
rs10792714	0.84[EUR][1000 genomes]
rs10792715	0.85[EUR][1000 genomes]
rs10898202	0.87[EUR][1000 genomes]
rs10898208	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11233900	0.91[EUR][1000 genomes]
rs12363188	0.84[EUR][1000 genomes]
rs1793037	1.00[CEU][hapmap]
rs1945799	0.88[EUR][1000 genomes]
rs1945800	0.81[MEX][hapmap];0.85[TSI][hapmap];0.80[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1945826	0.84[LWK][hapmap]
rs1945832	0.85[EUR][1000 genomes]
rs1984374	0.89[EUR][1000 genomes]
rs2051472	0.81[MEX][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs2514158	0.82[CHB][hapmap]
rs3750917	0.87[EUR][1000 genomes]
rs4259848	0.80[EUR][1000 genomes]
rs4944464	0.91[EUR][1000 genomes]
rs6592163	0.81[MEX][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs7109671	0.81[MEX][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes]
rs7114926	0.89[EUR][1000 genomes]
rs7929774	0.91[EUR][1000 genomes]
rs7935399	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2751034	chr11:83801970-83840272	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83801400-83813400	Weak transcription	Brain Germinal Matrix	brain
2	chr11:83802600-83812200	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83803000-83812600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:83803400-83811600	Weak transcription	Brain Angular Gyrus	brain
5	chr11:83807400-83808600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:83807400-83808600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:83807400-83808600	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:83807400-83808600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:83807400-83809600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:83807600-83808800	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:83807800-83809000	Enhancers	Fetal Heart	heart
12	chr11:83808000-83808400	Enhancers	NH-A	brain
13	chr11:83808200-83808600	Enhancers	Adipose Nuclei	Adipose
14	chr11:83808200-83808600	Enhancers	Brain Substantia Nigra	brain

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