Variant report

Variant	rs79310029
Chromosome Location	chr5:106299888-106299889
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016354	chr5:105752391-106392762	ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv830439	chr5:106192038-106383828	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv882679	chr5:106263197-106399718	Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1841017	chr5:106299280-106325865	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106288400-106302000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:106292400-106302000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:106295800-106302200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:106295800-106309400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:106298200-106300800	Enhancers	A549	lung
6	chr5:106298400-106300200	Enhancers	Fetal Heart	heart
7	chr5:106298800-106308400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:106299200-106300800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr5:106299400-106300800	Enhancers	Stomach Mucosa	stomach
10	chr5:106299600-106300600	Weak transcription	Fetal Intestine Small	intestine
11	chr5:106299800-106300200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:106299800-106300800	Enhancers	HUVEC	blood vessel
13	chr5:106299800-106305400	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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