Variant report

Variant	rs7931943
Chromosome Location	chr11:86581026-86581027
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:86580752..86581690-chr11:87001116..87001998,4	K562	blood:
2	chr11:86581012..86581624-chr11:86629157..86629701,2	K562	blood:
3	chr11:86580545..86581686-chr11:86630141..86631577,11	MCF-7	breast:
4	chr11:86577401..86581075-chr11:86581789..86584675,3	K562	blood:
5	chr11:86580497..86581890-chr11:87131990..87132832,7	K562	blood:
6	chr11:86579751..86582227-chr11:86628574..86630998,2	K562	blood:
7	chr11:86580728..86581938-chr11:86630343..86631549,9	K562	blood:
8	chr11:86580722..86581663-chr11:87063426..87064386,3	K562	blood:

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10501631	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898544	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10898548	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11234843	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11234847	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234848	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234849	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234854	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11234863	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11234864	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12225381	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57252038	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73512476	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73526137	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86543200-86582600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:86549600-86581400	Weak transcription	Ovary	ovary
3	chr11:86562600-86585800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:86563200-86598800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:86566800-86585800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:86576000-86582400	Weak transcription	Aorta	Aorta
7	chr11:86576800-86599800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:86577000-86583000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:86577400-86583000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:86578200-86593400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:86578200-86627400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:86578400-86585400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:86580400-86581600	Enhancers	Fetal Muscle Leg	muscle
14	chr11:86580400-86583000	Enhancers	NHLF	lung
15	chr11:86580600-86581200	Enhancers	Adipose Nuclei	Adipose
16	chr11:86580600-86581200	Enhancers	Fetal Lung	lung
17	chr11:86580600-86581200	Enhancers	Rectal Smooth Muscle	rectum
18	chr11:86580600-86581600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr11:86580600-86581800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:86580600-86583200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:86580600-86583800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:86580800-86581600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:86580800-86581600	Enhancers	A549	lung
24	chr11:86580800-86581600	Enhancers	NH-A	brain
25	chr11:86581000-86581200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:86581000-86581200	Enhancers	HSMM	muscle
27	chr11:86581000-86581800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:86581000-86585000	Weak transcription	HSMMtube	muscle

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