Variant report

Variant	rs7932206
Chromosome Location	chr11:120617435-120617436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120610677..120612695-chr11:120615740..120618273,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17124516	1.00[AMR][1000 genomes]
rs17124518	1.00[AMR][1000 genomes]
rs17124555	1.00[AMR][1000 genomes]
rs4312073	1.00[AMR][1000 genomes]
rs7479137	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1041465	chr11:120582595-120630114	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv541180	chr11:120582595-120630114	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120611400-120617600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:120611400-120617600	Weak transcription	Brain Substantia Nigra	brain
3	chr11:120615000-120617600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:120615400-120617600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:120616000-120617600	Weak transcription	Brain Angular Gyrus	brain
6	chr11:120616200-120619000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:120616800-120620600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:120616800-120625200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:120617000-120617600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:120617000-120618800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:120617000-120619000	Enhancers	HMEC	breast
12	chr11:120617000-120620600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:120617200-120618000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr11:120617200-120618400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:120617200-120618800	Enhancers	NHEK	skin
16	chr11:120617200-120619000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:120617200-120619200	Enhancers	Fetal Brain Male	brain
18	chr11:120617200-120624400	Enhancers	Brain Germinal Matrix	brain
19	chr11:120617400-120617600	Enhancers	Esophagus	oesophagus
20	chr11:120617400-120617800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:120617400-120629800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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