Variant report

Variant	rs7933311
Chromosome Location	chr11:9633368-9633369
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9608984..9611660-chr11:9632383..9635489,3	K562	blood:
2	chr11:9601017..9602590-chr11:9632104..9633833,2	MCF-7	breast:
3	chr11:9597111..9603831-chr11:9632388..9638176,11	K562	blood:
4	chr11:9589863..9592978-chr11:9632988..9635615,3	K562	blood:
5	chr11:9593380..9601954-chr11:9626466..9639393,32	K562	blood:

Variant related genes	Relation type
ENSG00000238387	Chromatin interaction
ENSG00000166483	Chromatin interaction
ENSG00000243869	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16906884	0.80[AFR][1000 genomes]
rs16906887	0.82[AFR][1000 genomes]
rs7950271	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9597200-9635000	Weak transcription	Pancreas	Pancrea
2	chr11:9610600-9635000	Weak transcription	Aorta	Aorta
3	chr11:9623400-9634600	Weak transcription	Thymus	Thymus
4	chr11:9623600-9633600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:9623600-9634200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:9623600-9634600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:9623600-9634800	Weak transcription	Esophagus	oesophagus
8	chr11:9623600-9635000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:9624200-9634800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:9624400-9634200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:9624400-9634200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:9624400-9635000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:9628800-9634000	Weak transcription	Fetal Intestine Large	intestine
14	chr11:9628800-9634400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:9628800-9634800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:9629000-9634200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:9629200-9633800	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:9629200-9633800	Weak transcription	Fetal Intestine Small	intestine
19	chr11:9629200-9634800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:9629400-9634400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:9629400-9634400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr11:9629400-9634400	Enhancers	HepG2	liver
23	chr11:9629400-9634800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:9629600-9634600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr11:9630200-9634400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:9630200-9634600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:9630200-9635000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr11:9630600-9634400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:9631000-9634600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr11:9631800-9633800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:9631800-9634000	Weak transcription	GM12878-XiMat	blood
32	chr11:9632000-9633600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:9632000-9633600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:9632000-9633800	Weak transcription	NHEK	skin
35	chr11:9632000-9634200	Weak transcription	HMEC	breast
36	chr11:9632000-9634400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:9632000-9634400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:9632600-9633600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:9632600-9633600	Weak transcription	Primary B cells from peripheral blood	blood
40	chr11:9632600-9634400	Enhancers	A549	lung
41	chr11:9632600-9634800	Enhancers	Placenta	Placenta
42	chr11:9633000-9635000	Weak transcription	Right Atrium	heart
43	chr11:9633200-9633600	Weak transcription	Dnd41	blood
44	chr11:9633200-9633600	Weak transcription	Hela-S3	cervix
45	chr11:9633200-9633600	Weak transcription	K562	blood
46	chr11:9633200-9634400	Enhancers	Primary B cells from cord blood	blood
47	chr11:9633200-9634800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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