Variant report

Variant	rs7933524
Chromosome Location	chr11:93395056-93395057
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:93394819..93395321-chr17:39845089..39845936,2	Hela-S3	cervix:
2	chr11:93394763..93395332-chr16:9185254..9185867,2	Hela-S3	cervix:
3	chr11:93393142..93395279-chr11:93515864..93518097,3	K562	blood:
4	chr11:93393652..93395603-chr11:93473209..93475607,2	MCF-7	breast:
5	chr11:93394692..93395298-chr17:33569918..33570541,2	Hela-S3	cervix:
6	chr11:93393119..93395461-chr11:93422571..93425502,2	K562	blood:
7	chr11:93393010..93396864-chr11:93472820..93475395,3	K562	blood:
8	chr11:93393391..93395168-chr11:93473052..93476024,2	K562	blood:
9	chr11:93392460..93395279-chr11:93515167..93518670,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000166004	Chromatin interaction
ENSG00000166750	Chromatin interaction
ENSG00000173812	Chromatin interaction
ENSG00000266947	Chromatin interaction
ENSG00000042429	Chromatin interaction
ENSG00000182831	Chromatin interaction
ENSG00000182919	Chromatin interaction
ENSG00000166012	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs3802770	1.00[YRI][hapmap]
rs3802771	1.00[YRI][hapmap]
rs3802775	1.00[YRI][hapmap]
rs3819173	1.00[YRI][hapmap]
rs56688979	1.00[AMR][1000 genomes]
rs57415308	1.00[AFR][1000 genomes]
rs57563658	1.00[AMR][1000 genomes]
rs57963899	1.00[AMR][1000 genomes]
rs58031262	1.00[AMR][1000 genomes]
rs58563477	1.00[AMR][1000 genomes]
rs59651246	1.00[AMR][1000 genomes]
rs59661241	1.00[AMR][1000 genomes]
rs60226346	1.00[AFR][1000 genomes]
rs60309680	1.00[AMR][1000 genomes]
rs61077719	1.00[AMR][1000 genomes]
rs61152073	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93394000-93395400	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr11:93394000-93395600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:93394000-93395800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:93394200-93395200	Active TSS	Duodenum Mucosa	Duodenum
5	chr11:93394200-93395400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
6	chr11:93394200-93395400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:93394200-93395400	Active TSS	Liver	Liver
8	chr11:93394200-93395400	Active TSS	Brain Angular Gyrus	brain
9	chr11:93394200-93395400	Active TSS	Brain Anterior Caudate	brain
10	chr11:93394200-93395400	Active TSS	Rectal Smooth Muscle	rectum
11	chr11:93394200-93395600	Active TSS	Colon Smooth Muscle	Colon
12	chr11:93394200-93395800	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr11:93394200-93395800	Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr11:93394200-93395800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr11:93394200-93395800	Active TSS	Right Atrium	heart
16	chr11:93394200-93395800	Active TSS	A549	lung
17	chr11:93394200-93396000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:93394200-93396200	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr11:93394400-93395200	Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr11:93394400-93395200	Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr11:93394400-93395200	Active TSS	Cortex derived primary cultured neurospheres	brain
22	chr11:93394400-93395200	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr11:93394400-93395200	Active TSS	Esophagus	oesophagus
24	chr11:93394400-93395200	Active TSS	Fetal Brain Female	brain
25	chr11:93394400-93395200	Active TSS	Lung	lung
26	chr11:93394400-93395200	Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr11:93394400-93395400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:93394400-93395400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:93394400-93395400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:93394400-93395400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:93394400-93395400	Active TSS	Brain Cingulate Gyrus	brain
32	chr11:93394400-93395400	Active TSS	Brain Substantia Nigra	brain
33	chr11:93394400-93395400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
34	chr11:93394400-93395400	Active TSS	Fetal Heart	heart
35	chr11:93394400-93395400	Active TSS	Fetal Kidney	kidney
36	chr11:93394400-93395400	Active TSS	Fetal Lung	lung
37	chr11:93394400-93395400	Active TSS	Pancreas	Pancrea
38	chr11:93394400-93395400	Active TSS	HSMM	muscle
39	chr11:93394400-93395600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:93394400-93395600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr11:93394400-93395600	Active TSS	Muscle Satellite Cultured Cells	--
42	chr11:93394400-93395600	Active TSS	Aorta	Aorta
43	chr11:93394400-93395600	Active TSS	Colonic Mucosa	Colon
44	chr11:93394400-93395600	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr11:93394400-93395600	Active TSS	Fetal Intestine Large	intestine
46	chr11:93394400-93395600	Active TSS	Fetal Muscle Trunk	muscle
47	chr11:93394400-93395600	Active TSS	Fetal Muscle Leg	muscle
48	chr11:93394400-93395600	Active TSS	Placenta	Placenta
49	chr11:93394400-93395600	Active TSS	Fetal Stomach	stomach
50	chr11:93394400-93395600	Active TSS	Left Ventricle	heart

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