Variant report

Variant	rs7934276
Chromosome Location	chr11:100502331-100502332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100483839..100486861-chr11:100501831..100504334,3	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10894999	1.00[CHB][hapmap]
rs10895000	1.00[CHB][hapmap]
rs1111890	1.00[ASN][1000 genomes]
rs11607909	1.00[CHB][hapmap]
rs583366	0.86[ASN][1000 genomes]
rs594476	0.93[ASN][1000 genomes]
rs6590818	1.00[CHB][hapmap]
rs7939778	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053430	chr11:99888390-100629136	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1042067	chr11:99889697-100629136	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv556122	chr11:99893282-100585889	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1037689	chr11:99895378-100624599	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1040942	chr11:99895378-100629136	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1039852	chr11:99901695-100610533	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv541152	chr11:99901695-100610533	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1045190	chr11:99913193-100627395	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv541153	chr11:99913193-100627395	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv529454	chr11:99913394-100627255	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv1043022	chr11:100387466-100610533	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv832246	chr11:100426725-100606957	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv556128	chr11:100493995-100513913	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1037743	chr11:100498709-100521043	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100500600-100503400	Enhancers	Liver	Liver
2	chr11:100501000-100503800	Weak transcription	Fetal Brain Male	brain
3	chr11:100501400-100502400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:100501400-100502400	Enhancers	Fetal Intestine Large	intestine
5	chr11:100501400-100502600	Enhancers	Stomach Mucosa	stomach
6	chr11:100501400-100502800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr11:100501600-100502400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:100501600-100502400	Enhancers	Fetal Muscle Leg	muscle
9	chr11:100501600-100502400	Enhancers	Left Ventricle	heart
10	chr11:100501600-100502400	Enhancers	Ovary	ovary
11	chr11:100501600-100502400	Enhancers	Right Atrium	heart
12	chr11:100501600-100502400	Enhancers	Right Ventricle	heart
13	chr11:100501600-100502400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr11:100501600-100502400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr11:100501600-100502400	Enhancers	Spleen	Spleen
16	chr11:100501600-100502600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:100501600-100504600	Enhancers	Placenta	Placenta
18	chr11:100501800-100502400	Enhancers	Psoas Muscle	Psoas
19	chr11:100501800-100502600	Enhancers	Duodenum Mucosa	Duodenum
20	chr11:100501800-100502600	Enhancers	Fetal Intestine Small	intestine
21	chr11:100501800-100504200	Enhancers	Fetal Stomach	stomach
22	chr11:100501800-100506200	Enhancers	Fetal Heart	heart
23	chr11:100501800-100512200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:100502000-100502400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:100502000-100502400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:100502000-100502400	Enhancers	Small Intestine	intestine
27	chr11:100502000-100503400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr11:100502000-100503800	Weak transcription	K562	blood
29	chr11:100502000-100509400	Weak transcription	Fetal Kidney	kidney
30	chr11:100502000-100512800	Weak transcription	Gastric	stomach
31	chr11:100502200-100502400	Enhancers	Colonic Mucosa	Colon
32	chr11:100502200-100502400	Enhancers	HUVEC	blood vessel
33	chr11:100502200-100503200	Weak transcription	Fetal Lung	lung
34	chr11:100502200-100503400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:100502200-100503400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr11:100502200-100503400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr11:100502200-100503800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr11:100502200-100505200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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