Variant report

Variant	rs7934466
Chromosome Location	chr11:35368139-35368140
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35367320..35368822-chr11:35387386..35389201,2	MCF-7	breast:
2	chr11:35367767..35370379-chr11:35370546..35372523,3	K562	blood:
3	chr11:35360058..35364651-chr11:35365186..35370074,5	K562	blood:
4	chr11:35360349..35364651-chr11:35366832..35371612,5	K562	blood:
5	chr11:35366512..35368832-chr11:35383993..35385771,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10836375	0.85[CEU][hapmap];0.93[GIH][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs11033084	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294219	0.83[ASW][hapmap]
rs2421764	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847621	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847622	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.86[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858469	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3858470	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3901811	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755396	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4756213	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756217	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756218	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484784	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930134	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943314	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7945809	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35361800-35368200	Weak transcription	Hela-S3	cervix
2	chr11:35362400-35368400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:35362600-35372800	Weak transcription	NHLF	lung
4	chr11:35363000-35369200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:35363200-35368600	Weak transcription	Liver	Liver
6	chr11:35364600-35371600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:35364800-35370000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:35365200-35368400	Enhancers	Primary T cells from cord blood	blood
9	chr11:35365600-35370400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr11:35365800-35368800	Enhancers	Fetal Lung	lung
11	chr11:35365800-35369800	Enhancers	Fetal Muscle Leg	muscle
12	chr11:35366000-35370400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr11:35366000-35370600	Enhancers	HepG2	liver
14	chr11:35366200-35370800	Enhancers	Stomach Smooth Muscle	stomach
15	chr11:35366200-35371000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:35366200-35372000	Weak transcription	K562	blood
17	chr11:35366800-35368600	Enhancers	Pancreas	Pancrea
18	chr11:35366800-35369800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr11:35366800-35371600	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr11:35367000-35368200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:35367000-35368200	Weak transcription	Adipose Nuclei	Adipose
22	chr11:35367000-35370000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:35367000-35370200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:35367000-35385400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:35367200-35369400	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr11:35367200-35369400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:35367200-35369600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:35367200-35369600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:35367200-35370000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr11:35367200-35370600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:35367200-35370600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:35367200-35370800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr11:35367200-35371200	Weak transcription	Fetal Thymus	thymus
34	chr11:35367200-35374000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr11:35367200-35374000	Weak transcription	Gastric	stomach
36	chr11:35367200-35380200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:35367600-35369000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr11:35367600-35371600	Enhancers	NHDF-Ad	bronchial
39	chr11:35367800-35369800	Enhancers	Brain Hippocampus Middle	brain
40	chr11:35367800-35370200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:35367800-35370800	Enhancers	Placenta	Placenta
42	chr11:35368000-35368200	Enhancers	Brain Substantia Nigra	brain
43	chr11:35368000-35368200	Enhancers	Right Atrium	heart
44	chr11:35368000-35368400	Weak transcription	Brain Anterior Caudate	brain
45	chr11:35368000-35368400	Enhancers	Left Ventricle	heart
46	chr11:35368000-35369600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr11:35368000-35369800	Enhancers	Colon Smooth Muscle	Colon
48	chr11:35368000-35370200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:35368000-35372400	Enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links