Variant report

Variant	rs7934719
Chromosome Location	chr11:108341864-108341865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108333954..108342521-chr11:108361561..108373383,35	K562	blood:
2	chr11:108339716..108342136-chr11:108463362..108464955,2	K562	blood:

Variant related genes	Relation type
ENSG00000110723	Chromatin interaction
ENSG00000178202	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10431061	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10749917	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10749918	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10789665	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10890848	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10890849	0.90[ASN][1000 genomes]
rs11212636	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11212637	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11212638	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11212659	0.91[ASN][1000 genomes]
rs11212661	0.89[ASN][1000 genomes]
rs11212666	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11212676	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12223381	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12419828	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12801988	0.87[ASN][1000 genomes]
rs2118308	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2118309	0.84[ASN][1000 genomes]
rs3765632	0.90[ASN][1000 genomes]
rs3824987	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3901851	0.89[ASN][1000 genomes]
rs4753842	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4754322	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60639858	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61913892	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6589018	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7111091	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7126588	0.88[ASN][1000 genomes]
rs751343	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7943063	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7943203	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs893279	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108338200-108343200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:108338200-108345400	Weak transcription	Gastric	stomach
3	chr11:108338200-108345600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:108338200-108345600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:108338200-108346200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:108338200-108359000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:108338200-108367600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:108338400-108347600	Weak transcription	Lung	lung
9	chr11:108338400-108352600	Weak transcription	Spleen	Spleen
10	chr11:108338600-108343000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:108338600-108344400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:108338600-108347800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:108338600-108364800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr11:108338600-108367200	Weak transcription	A549	lung
15	chr11:108338600-108367800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:108338800-108343400	Weak transcription	NH-A	brain
17	chr11:108338800-108344000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:108338800-108344200	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr11:108338800-108344200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:108338800-108344200	Weak transcription	HSMM	muscle
21	chr11:108338800-108344600	Weak transcription	Fetal Intestine Large	intestine
22	chr11:108338800-108345000	Weak transcription	Primary T cells from cord blood	blood
23	chr11:108338800-108345400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:108338800-108345400	Weak transcription	Aorta	Aorta
25	chr11:108338800-108345400	Weak transcription	Esophagus	oesophagus
26	chr11:108338800-108345400	Weak transcription	Fetal Stomach	stomach
27	chr11:108338800-108345400	Weak transcription	Ovary	ovary
28	chr11:108338800-108345400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:108338800-108345400	Weak transcription	Thymus	Thymus
30	chr11:108338800-108345600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr11:108338800-108345600	Weak transcription	Pancreas	Pancrea
32	chr11:108338800-108345800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:108338800-108347200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr11:108338800-108347400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr11:108338800-108347400	Weak transcription	Fetal Kidney	kidney
36	chr11:108338800-108347400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr11:108338800-108347600	Weak transcription	Colon Smooth Muscle	Colon
38	chr11:108338800-108347600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:108338800-108347800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:108338800-108347800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr11:108338800-108347800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:108338800-108347800	Weak transcription	Colonic Mucosa	Colon
43	chr11:108338800-108347800	Weak transcription	Left Ventricle	heart
44	chr11:108338800-108347800	Weak transcription	Right Ventricle	heart
45	chr11:108338800-108348200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr11:108338800-108349000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr11:108338800-108352400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:108338800-108354800	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr11:108338800-108356800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr11:108338800-108356800	Weak transcription	H1 Cell Line	embryonic stem cell

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