Variant report

Variant	rs7934929
Chromosome Location	chr11:34370236-34370237
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34365763..34368722-chr11:34368922..34370946,2	MCF-7	breast:
2	chr11:34368701..34370901-chr11:34379752..34381357,2	K562	blood:
3	chr11:34368537..34371450-chr11:34371767..34375088,3	K562	blood:
4	chr11:34370190..34372687-chr11:34377981..34381177,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10836192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12288819	0.80[CEU][hapmap]
rs12361888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886657	0.90[CEU][hapmap]
rs2073057	0.82[CEU][hapmap]
rs208678	0.82[CEU][hapmap]
rs208679	0.81[CEU][hapmap]
rs3781708	0.81[CEU][hapmap]
rs409598	0.82[CEU][hapmap]
rs7116915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7117611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs742635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928840	0.90[CEU][hapmap];0.87[AMR][1000 genomes]
rs7932025	0.90[CEU][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv897210	chr11:34349427-34381075	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34361800-34370800	Weak transcription	GM12878-XiMat	blood
2	chr11:34363000-34372400	Enhancers	Fetal Muscle Leg	muscle
3	chr11:34364200-34376600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:34364400-34371000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:34365400-34372200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr11:34366000-34371800	Enhancers	Right Atrium	heart
7	chr11:34366200-34370800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:34366200-34371200	Enhancers	Fetal Stomach	stomach
9	chr11:34366400-34374000	Enhancers	Psoas Muscle	Psoas
10	chr11:34367000-34371800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:34367000-34376200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:34367200-34375200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:34367400-34370400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:34367400-34376400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr11:34367600-34372800	Enhancers	HepG2	liver
16	chr11:34367800-34376400	Weak transcription	Pancreas	Pancrea
17	chr11:34368200-34370400	Weak transcription	Brain Substantia Nigra	brain
18	chr11:34368200-34370400	Weak transcription	NHDF-Ad	bronchial
19	chr11:34368200-34370600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr11:34368200-34373000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr11:34368200-34375000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:34368200-34376600	Weak transcription	Brain Angular Gyrus	brain
23	chr11:34368400-34371000	Enhancers	Fetal Heart	heart
24	chr11:34368400-34372200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr11:34368400-34375800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:34368400-34376200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:34368400-34377800	Weak transcription	Gastric	stomach
28	chr11:34368600-34370400	Weak transcription	Fetal Lung	lung
29	chr11:34368600-34371200	Weak transcription	NH-A	brain
30	chr11:34368600-34371400	Enhancers	Stomach Smooth Muscle	stomach
31	chr11:34368600-34371400	Enhancers	A549	lung
32	chr11:34368600-34372000	Enhancers	HSMM	muscle
33	chr11:34368600-34373200	Enhancers	HSMMtube	muscle
34	chr11:34368600-34374200	Weak transcription	Stomach Mucosa	stomach
35	chr11:34368600-34376400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:34368800-34370400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr11:34368800-34370600	Weak transcription	Osteobl	bone
38	chr11:34368800-34371200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:34368800-34371400	Weak transcription	Hela-S3	cervix
40	chr11:34368800-34374800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr11:34368800-34376200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:34368800-34376200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:34369000-34371800	Weak transcription	Fetal Muscle Trunk	muscle
44	chr11:34369400-34370800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:34369400-34372200	Enhancers	Left Ventricle	heart
46	chr11:34369400-34372800	Enhancers	Liver	Liver
47	chr11:34369600-34370400	Enhancers	Aorta	Aorta
48	chr11:34369800-34370400	Weak transcription	Brain Germinal Matrix	brain
49	chr11:34369800-34370600	Enhancers	Small Intestine	intestine
50	chr11:34370000-34370400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung

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