Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:99503820..99505531-chr3:99508281..99509864,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1718240	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2449106	0.82[AMR][1000 genomes]
rs634861	0.81[ASN][1000 genomes]
rs793450	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs793469	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs793482	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs793498	C3orf26	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99492000-99517600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:99494200-99513600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:99496000-99513000	Weak transcription	NHEK	skin
4	chr3:99499400-99509000	Weak transcription	Aorta	Aorta
5	chr3:99501000-99513000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:99501400-99509000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:99502000-99505400	Genic enhancers	Muscle Satellite Cultured Cells	--
8	chr3:99502400-99508800	Weak transcription	Adipose Nuclei	Adipose
9	chr3:99502600-99506800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:99502600-99518200	Weak transcription	HSMMtube	muscle
11	chr3:99502800-99507200	Weak transcription	NHLF	lung
12	chr3:99502800-99508200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:99502800-99518400	Weak transcription	NH-A	brain
14	chr3:99503000-99505800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:99503000-99507200	Weak transcription	NHDF-Ad	bronchial
16	chr3:99503600-99509000	Weak transcription	HUVEC	blood vessel
17	chr3:99503800-99505600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:99504600-99513000	Weak transcription	HSMM	muscle
19	chr3:99505200-99505600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:99505200-99507200	Weak transcription	Osteobl	bone

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