Variant report

Variant	rs793674
Chromosome Location	chr6:24347883-24347884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12661152	0.83[ASN][1000 genomes]
rs1535331	0.94[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs35505454	0.90[ASN][1000 genomes]
rs6922023	0.95[ASN][1000 genomes]
rs9379655	0.94[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap]
rs9379656	0.91[ASN][1000 genomes]
rs9460999	0.83[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs793674	PRSS16	cis	cerebellum	SCAN
rs793674	ZNF165	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24339600-24355600	Weak transcription	Pancreas	Pancrea
2	chr6:24341200-24357600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:24345200-24349400	Weak transcription	Fetal Kidney	kidney
4	chr6:24345800-24356800	Weak transcription	Fetal Intestine Large	intestine
5	chr6:24346000-24354800	Weak transcription	A549	lung
6	chr6:24347000-24357000	Weak transcription	Fetal Intestine Small	intestine
7	chr6:24347600-24351600	Genic enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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