Variant report

Variant	rs793689
Chromosome Location	chr6:24431526-24431527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:24421995..24424017-chr6:24428873..24431634,2	K562	blood:
2	chr6:24430844..24432891-chr6:24519902..24523248,3	MCF-7	breast:
3	chr6:24430975..24431906-chr6:24520567..24521619,5	MCF-7	breast:
4	chr6:24429196..24431660-chr6:24699102..24701042,2	MCF-7	breast:
5	chr6:24413201..24415525-chr6:24429958..24432815,2	K562	blood:
6	chr6:24431387..24432156-chr6:24520936..24521780,2	K562	blood:
7	chr6:24431522..24434175-chr6:24447084..24450027,2	MCF-7	breast:
8	chr6:24431084..24431585-chr6:24495592..24496144,2	MCF-7	breast:
9	chr6:24430350..24432062-chr6:24520550..24521835,7	MCF-7	breast:
10	chr6:24413201..24415774-chr6:24431315..24432878,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112294	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1742273	0.85[EUR][1000 genomes]
rs1742282	0.82[AFR][1000 genomes]
rs2273605	0.80[EUR][1000 genomes]
rs2487515	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2753913	0.85[EUR][1000 genomes]
rs2753915	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2753927	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2793423	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2793424	0.84[EUR][1000 genomes]
rs2793425	0.86[EUR][1000 genomes]
rs2793426	0.86[EUR][1000 genomes]
rs2793427	0.86[EUR][1000 genomes]
rs35618643	0.83[ASN][1000 genomes]
rs3736798	0.93[ASN][1000 genomes]
rs3747768	0.83[ASN][1000 genomes]
rs6942189	0.89[EUR][1000 genomes]
rs7750377	0.93[ASN][1000 genomes]
rs793672	0.84[EUR][1000 genomes]
rs793681	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs793683	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24404600-24437400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:24417400-24451800	Strong transcription	Liver	Liver
3	chr6:24421200-24448800	Weak transcription	Gastric	stomach
4	chr6:24421200-24459600	Weak transcription	Spleen	Spleen
5	chr6:24421400-24434000	Weak transcription	Fetal Brain Male	brain
6	chr6:24421600-24432000	Weak transcription	Fetal Heart	heart
7	chr6:24422400-24437400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:24423400-24433600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:24423400-24437200	Weak transcription	Pancreas	Pancrea
10	chr6:24423400-24439400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:24423600-24437200	Weak transcription	Right Ventricle	heart
12	chr6:24423800-24432000	Weak transcription	NHEK	skin
13	chr6:24424000-24432200	Weak transcription	Small Intestine	intestine
14	chr6:24424000-24456600	Weak transcription	Ovary	ovary
15	chr6:24424400-24445800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:24425400-24432000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:24425400-24437200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:24425400-24439600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:24426000-24438800	Weak transcription	Brain Substantia Nigra	brain
20	chr6:24426200-24431600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:24426200-24446000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:24426400-24432400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:24426400-24441600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:24426400-24446000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:24426600-24438800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr6:24427000-24431600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:24427200-24433800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:24427400-24435000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:24427600-24432400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr6:24427600-24433800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:24427600-24436600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr6:24427600-24437600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:24427600-24439200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:24427600-24439400	Weak transcription	Fetal Thymus	thymus
35	chr6:24427600-24440000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:24427600-24440000	Weak transcription	Dnd41	blood
37	chr6:24427600-24441800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr6:24427600-24445600	Weak transcription	Fetal Brain Female	brain
39	chr6:24427600-24456800	Weak transcription	Lung	lung
40	chr6:24427800-24431800	Weak transcription	Fetal Intestine Large	intestine
41	chr6:24427800-24435800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr6:24427800-24467000	Weak transcription	Brain Germinal Matrix	brain
43	chr6:24428200-24432600	Weak transcription	GM12878-XiMat	blood
44	chr6:24428200-24438000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:24428200-24449400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr6:24428800-24445000	Weak transcription	Psoas Muscle	Psoas
47	chr6:24429000-24447800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:24429000-24494200	Weak transcription	Primary B cells from cord blood	blood
49	chr6:24429200-24455600	Weak transcription	Brain Angular Gyrus	brain
50	chr6:24429400-24437000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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