Variant report

Variant	rs7936960
Chromosome Location	chr11:76682925-76682926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7118970	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1042924	chr11:76659477-76709407	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1040833	chr11:76667160-76709407	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv396	chr11:76670116-76702745	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76631400-76688400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:76645800-76683800	Weak transcription	Esophagus	oesophagus
3	chr11:76646600-76688000	Weak transcription	HMEC	breast
4	chr11:76657200-76688400	Weak transcription	Gastric	stomach
5	chr11:76660000-76710800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:76665800-76688400	Weak transcription	Right Ventricle	heart
7	chr11:76666800-76695400	Weak transcription	NHEK	skin
8	chr11:76672200-76697800	Weak transcription	Left Ventricle	heart
9	chr11:76672400-76696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:76673000-76689600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:76673800-76690400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:76674000-76688600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:76674200-76683800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:76674400-76696000	Weak transcription	Small Intestine	intestine
15	chr11:76675000-76683800	Weak transcription	Placenta	Placenta
16	chr11:76675000-76688600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:76675000-76689800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:76675000-76691600	Weak transcription	Fetal Lung	lung
19	chr11:76675000-76721800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr11:76675000-76725600	Weak transcription	A549	lung
21	chr11:76675000-76729600	Weak transcription	Brain Angular Gyrus	brain
22	chr11:76675200-76684000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:76675200-76688000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:76675200-76688000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:76675200-76688200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:76675400-76688600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:76675400-76688800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:76675400-76689000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:76681600-76684200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:76681800-76683400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:76681800-76683400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
32	chr11:76682000-76683400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:76682600-76683000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
34	chr11:76682600-76683000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:76682600-76683200	ZNF genes & repeats	Brain Hippocampus Middle	brain
36	chr11:76682800-76683200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
37	chr11:76682800-76683400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

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