Variant report

Variant	rs7937318
Chromosome Location	chr11:58986433-58986434
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr11:58986335-58987004	GM12878	blood:	n/a	n/a
2	RELA	chr11:58986372-58986863	GM12891	blood:	n/a	n/a
3	BATF	chr11:58986379-58986914	GM12878	blood:	n/a	n/a
4	NFIC	chr11:58986218-58986809	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58985014..58986524-chr11:58989804..58992131,2	K562	blood:

Variant related genes	Relation type
RN7SL42P	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1815849	1.00[AMR][1000 genomes]
rs545263	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv2758272	chr11:58700092-59008673	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2759830	chr11:58700092-59008673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	esv1821250	chr11:58925860-59059179	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	esv3351601	chr11:58979308-59052763	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58975400-58986600	Weak transcription	Gastric	stomach
2	chr11:58976000-58989400	Weak transcription	Stomach Mucosa	stomach
3	chr11:58979200-58989600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:58980400-58991200	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:58981000-58991600	Weak transcription	Spleen	Spleen
6	chr11:58984200-58988200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:58984400-58990600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:58984600-58988400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:58984600-58990600	Weak transcription	Placenta	Placenta
10	chr11:58984600-58990600	Weak transcription	Fetal Thymus	thymus
11	chr11:58984800-58987200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:58984800-58988200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:58984800-58988200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:58984800-58988200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:58984800-58988600	Weak transcription	Hela-S3	cervix
16	chr11:58985000-58987200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:58985000-58988600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:58985000-58988600	Weak transcription	Colon Smooth Muscle	Colon
19	chr11:58985000-58989600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:58985000-58990600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:58985000-58991600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:58985000-58993200	Enhancers	Primary B cells from peripheral blood	blood
23	chr11:58985200-58988200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:58985200-58989600	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr11:58985200-58990000	Enhancers	Primary B cells from cord blood	blood
26	chr11:58985600-58986800	Flanking Active TSS	GM12878-XiMat	blood
27	chr11:58985600-58986800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr11:58985600-58987200	Weak transcription	NHLF	lung
29	chr11:58985800-58987200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:58985800-58987800	Weak transcription	Adipose Nuclei	Adipose
31	chr11:58986000-58987000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:58986000-58987400	Weak transcription	NHDF-Ad	bronchial
33	chr11:58986000-58988200	Weak transcription	Fetal Stomach	stomach
34	chr11:58986000-58989600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:58986000-58991200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr11:58986400-58988800	Weak transcription	Rectal Mucosa Donor 31	rectum

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