Variant report

Variant	rs7937648
Chromosome Location	chr11:46381756-46381757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46379173..46381825-chr11:46695646..46697480,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12273343	0.92[AFR][1000 genomes]
rs12277858	0.93[AFR][1000 genomes]
rs7930857	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554201	chr11:46281835-46422686	Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv825867	chr11:46303184-46425613	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1797501	chr11:46315437-46402521	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv1811345	chr11:46317062-46438072	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv554202	chr11:46334239-46469900	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv897316	chr11:46349631-46417815	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
7	nsv897317	chr11:46363411-46417815	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46370000-46384000	Weak transcription	Fetal Kidney	kidney
2	chr11:46370000-46395800	Weak transcription	Aorta	Aorta
3	chr11:46370400-46382400	Weak transcription	Psoas Muscle	Psoas
4	chr11:46370400-46384000	Weak transcription	A549	lung
5	chr11:46370600-46382600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:46370800-46382400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:46370800-46382600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:46370800-46382800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:46371000-46382400	Weak transcription	HSMMtube	muscle
10	chr11:46371000-46382400	Weak transcription	HUVEC	blood vessel
11	chr11:46371400-46382400	Weak transcription	NH-A	brain
12	chr11:46373800-46382600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:46374000-46382400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:46374000-46382400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr11:46374200-46382600	Weak transcription	Fetal Intestine Large	intestine
16	chr11:46374200-46384400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:46374400-46389600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:46374400-46389600	Weak transcription	Fetal Brain Female	brain
19	chr11:46374600-46382400	Weak transcription	Liver	Liver
20	chr11:46374600-46382600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:46375000-46382400	Weak transcription	Fetal Heart	heart
22	chr11:46375200-46382200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr11:46375200-46382400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:46375400-46382400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:46375400-46382400	Weak transcription	Brain Anterior Caudate	brain
26	chr11:46375400-46382400	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:46375400-46382400	Weak transcription	NHLF	lung
28	chr11:46375600-46382200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:46375600-46382400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr11:46375800-46382400	Weak transcription	Fetal Lung	lung
31	chr11:46375800-46382600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:46376000-46389600	Weak transcription	Brain Germinal Matrix	brain
33	chr11:46378200-46382000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr11:46378200-46382400	Weak transcription	Brain Angular Gyrus	brain
35	chr11:46378400-46382000	Weak transcription	Dnd41	blood
36	chr11:46378400-46382400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:46378400-46382400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:46378600-46382400	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr11:46378600-46382600	Weak transcription	Brain Hippocampus Middle	brain
40	chr11:46378600-46382800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:46378600-46389400	Weak transcription	HepG2	liver
42	chr11:46378800-46382400	Weak transcription	Osteobl	bone
43	chr11:46379000-46382200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:46379000-46382400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr11:46379000-46382400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:46379000-46382400	Weak transcription	HSMM	muscle
47	chr11:46379200-46382400	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr11:46379200-46382400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr11:46379200-46382600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:46379200-46382600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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