Variant report

Variant	rs7938856
Chromosome Location	chr11:76267117-76267118
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76265177..76267818-chr11:76279245..76281186,2	K562	blood:
2	chr11:76255778..76257554-chr11:76266242..76268584,2	MCF-7	breast:
3	chr11:76265376..76267987-chr11:76270130..76272636,2	K562	blood:

Variant related genes	Relation type
ENSG00000158636	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17749618	1.00[MEX][hapmap]
rs1939467	0.92[MEX][hapmap]
rs1939468	0.81[CHD][hapmap];0.92[MEX][hapmap]
rs2282611	0.81[CHD][hapmap];0.92[MEX][hapmap]
rs3753051	0.81[CHD][hapmap];0.92[MEX][hapmap]
rs55904328	0.82[AMR][1000 genomes]
rs61894512	0.81[ASN][1000 genomes]
rs7107372	0.81[ASN][1000 genomes]
rs7115331	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7123361	0.81[CHD][hapmap];0.92[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76254800-76269800	Weak transcription	NHDF-Ad	bronchial
2	chr11:76256000-76273400	Weak transcription	Psoas Muscle	Psoas
3	chr11:76257200-76270200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:76257200-76272200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:76257400-76267800	Weak transcription	Esophagus	oesophagus
6	chr11:76257400-76269800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:76257400-76269800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:76257400-76270600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:76257400-76270800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:76257400-76271000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:76257400-76271000	Weak transcription	HSMMtube	muscle
12	chr11:76257400-76271000	Weak transcription	NHEK	skin
13	chr11:76257400-76271800	Weak transcription	Lung	lung
14	chr11:76257400-76272200	Weak transcription	Spleen	Spleen
15	chr11:76257400-76272400	Weak transcription	Ovary	ovary
16	chr11:76257800-76271400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:76258000-76270600	Weak transcription	Brain Substantia Nigra	brain
18	chr11:76258200-76270600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:76258400-76270600	Weak transcription	Adipose Nuclei	Adipose
20	chr11:76258400-76270600	Weak transcription	NH-A	brain
21	chr11:76258600-76271600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr11:76259200-76271000	Weak transcription	Left Ventricle	heart
23	chr11:76259600-76271200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:76259800-76271200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:76260600-76271000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr11:76261400-76268600	Weak transcription	Fetal Muscle Leg	muscle
27	chr11:76261400-76270000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:76261400-76279200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:76261600-76270800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr11:76262000-76270600	Weak transcription	Placenta	Placenta
31	chr11:76262000-76270800	Weak transcription	Hela-S3	cervix
32	chr11:76262000-76271000	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr11:76262200-76270600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr11:76262600-76270200	Weak transcription	Osteobl	bone
35	chr11:76264400-76268600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:76265000-76267200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:76265400-76270000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:76265800-76270800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr11:76266000-76270000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:76266000-76270200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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