Variant report

Variant	rs7938911
Chromosome Location	chr11:120672227-120672228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11217927	1.00[AMR][1000 genomes]
rs11217995	1.00[AMR][1000 genomes]
rs11821328	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271466	1.00[AMR][1000 genomes]
rs12288893	1.00[AMR][1000 genomes]
rs2850812	1.00[AMR][1000 genomes]
rs2852236	1.00[AMR][1000 genomes]
rs60883339	0.93[AFR][1000 genomes]
rs7113703	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120668200-120673200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:120670400-120672800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:120670400-120672800	Weak transcription	HepG2	liver
4	chr11:120670600-120676400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:120671400-120687400	Weak transcription	Brain Substantia Nigra	brain
6	chr11:120671800-120673400	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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