Variant report

Variant	rs7939107
Chromosome Location	chr11:64034773-64034774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr11:64034626-64035227	ECC-1	luminal epithelium:	n/a	n/a
2	TCF12	chr11:64034733-64035083	ECC-1	luminal epithelium:	n/a	n/a
3	POLR2A	chr11:64034671-64035039	HepG2	liver:	n/a	n/a
4	POLR2A	chr11:64034560-64037952	H1-neurons	neurons:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64033644..64035554-chr11:64101118..64102657,2	K562	blood:
2	chr11:64033954..64036003-chr20:61272731..61274742,2	MCF-7	breast:
3	chr11:64028329..64041732-chr11:64049023..64058851,39	MCF-7	breast:
4	chr11:64032072..64048684-chr11:64048768..64055711,68	MCF-7	breast:
5	chr11:64033536..64040775-chr11:64080684..64088458,16	K562	blood:
6	chr11:64033059..64034856-chr11:64121846..64123387,2	K562	blood:
7	chr11:64033188..64045448-chr11:64059274..64075790,38	MCF-7	breast:
8	chr11:63741777..63744026-chr11:64034710..64037556,2	MCF-7	breast:

No data

Variant related genes	Relation type
GPR137	TF binding region
ENSG00000173113	Chromatin interaction
ENSG00000002330	Chromatin interaction
ENSG00000126432	Chromatin interaction
ENSG00000173264	Chromatin interaction
ENSG00000173153	Chromatin interaction
ENSG00000167046	Chromatin interaction
ENSG00000176340	Chromatin interaction
ENSG00000256100	Chromatin interaction
ENSG00000182450	Chromatin interaction
ENSG00000219435	Chromatin interaction
ENSG00000207024	Chromatin interaction
ENSG00000168071	Chromatin interaction
ENSG00000101187	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1047206	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11600990	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11605738	0.81[EUR][1000 genomes]
rs11606014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12785488	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12788266	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12808002	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2001003	0.80[EUR][1000 genomes]
rs2276014	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2286614	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28395875	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28395876	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34292685	0.95[AMR][1000 genomes]
rs35692796	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs41294396	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs66968227	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7111278	0.80[EUR][1000 genomes]
rs71456304	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs71456309	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72922039	0.81[EUR][1000 genomes]
rs7478730	0.81[EUR][1000 genomes]
rs7938380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947143	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
2	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
3	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
4	nsv1035875	chr11:63800238-64132030	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	234 gene(s)	inside rSNPs	diseases
5	nsv469961	chr11:63822940-64085967	Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
6	nsv897660	chr11:63860826-64125142	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	231 gene(s)	inside rSNPs	diseases
7	nsv897661	chr11:63863405-64129722	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
8	nsv897662	chr11:63889749-64150370	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
9	nsv897664	chr11:63919742-64150370	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
10	nsv468592	chr11:63924446-64042997	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	166 gene(s)	inside rSNPs	diseases
11	nsv555184	chr11:63924446-64042997	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	166 gene(s)	inside rSNPs	diseases
12	nsv869944	chr11:63932152-64123062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
13	nsv468593	chr11:63941734-64089874	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
14	nsv555185	chr11:63941734-64089874	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
15	nsv555186	chr11:63949095-64097233	Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
16	nsv897667	chr11:63964657-64078380	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
17	nsv897668	chr11:63964657-64085298	Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	163 gene(s)	inside rSNPs	diseases
18	nsv897669	chr11:63964657-64089874	Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
19	nsv897670	chr11:63964657-64097233	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
20	nsv897671	chr11:63964657-64150370	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
21	nsv832186	chr11:63972260-64170059	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	180 gene(s)	inside rSNPs	diseases
22	nsv897672	chr11:63979643-64082807	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
23	esv1802320	chr11:63987425-64154633	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
24	nsv897679	chr11:63994692-64150370	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
25	nsv541064	chr11:63998625-64036450	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
26	nsv897682	chr11:63999529-64170500	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
27	nsv1043277	chr11:64002997-64132030	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7939107	PPP1R14B	Cis_1M	lymphoblastoid	RTeQTL
rs7939107	TRPT1	cis	Muscle Skeletal	GTEx

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64020000-64036400	Weak transcription	Fetal Kidney	kidney
2	chr11:64020200-64034800	Weak transcription	Right Atrium	heart
3	chr11:64020200-64035400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr11:64020400-64035200	Weak transcription	Primary B cells from cord blood	blood
5	chr11:64020400-64036000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:64020600-64035000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:64020600-64035600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:64021000-64035600	Weak transcription	Brain Angular Gyrus	brain
9	chr11:64021000-64035600	Weak transcription	Fetal Heart	heart
10	chr11:64021200-64034800	Strong transcription	Fetal Intestine Small	intestine
11	chr11:64021200-64034800	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:64021200-64035600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:64021400-64035800	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:64021800-64034800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:64021800-64034800	Strong transcription	Colonic Mucosa	Colon
16	chr11:64021800-64034800	Strong transcription	Fetal Intestine Large	intestine
17	chr11:64022000-64034800	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr11:64022000-64034800	Strong transcription	Lung	lung
19	chr11:64022000-64035400	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr11:64022200-64035800	Weak transcription	Psoas Muscle	Psoas
21	chr11:64022600-64034800	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr11:64023400-64035200	Strong transcription	Fetal Stomach	stomach
23	chr11:64025200-64034800	Strong transcription	A549	lung
24	chr11:64025400-64034800	Strong transcription	H9 Cell Line	embryonic stem cell
25	chr11:64025400-64034800	Strong transcription	Gastric	stomach
26	chr11:64025800-64035000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:64026400-64035200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr11:64027000-64035400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:64027200-64035200	Weak transcription	HepG2	liver
30	chr11:64027400-64035200	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr11:64027400-64036000	Weak transcription	Brain Substantia Nigra	brain
32	chr11:64027800-64035800	Weak transcription	Primary T cells from cord blood	blood
33	chr11:64028000-64035600	Weak transcription	GM12878-XiMat	blood
34	chr11:64028000-64036000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:64029400-64035200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:64029400-64035400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:64029400-64037600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:64030800-64035000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:64030800-64035600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:64031000-64034800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:64031000-64035000	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr11:64031000-64036000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr11:64031200-64035000	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:64031200-64035000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr11:64031200-64035600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:64031400-64035000	Strong transcription	Osteobl	bone
47	chr11:64031400-64035200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:64031400-64035400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr11:64031400-64035600	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr11:64031600-64034800	Strong transcription	HSMM	muscle

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