Variant report

Variant	rs7939268
Chromosome Location	chr11:8939141-8939142
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8936222..8938105-chr11:8938810..8940330,2	MCF-7	breast:
2	chr11:8931316..8934225-chr11:8937249..8940014,3	K562	blood:
3	chr11:8932851..8934873-chr11:8937588..8939434,2	K562	blood:
4	chr11:8714148..8716877-chr11:8938589..8940698,2	K562	blood:

Variant related genes	Relation type
ENSG00000254665	Chromatin interaction
ENSG00000166452	Chromatin interaction
ENSG00000166444	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7949740	0.93[AFR][1000 genomes]
rs7950777	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8933400-8947800	Weak transcription	Small Intestine	intestine
2	chr11:8933600-8944000	Weak transcription	Pancreas	Pancrea
3	chr11:8934000-8941800	Weak transcription	Colonic Mucosa	Colon
4	chr11:8934000-8952200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:8934200-8941600	Weak transcription	Esophagus	oesophagus
6	chr11:8934200-8948800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:8934800-8939400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:8935000-8940400	Genic enhancers	Fetal Muscle Leg	muscle
9	chr11:8935800-8940000	Weak transcription	Gastric	stomach
10	chr11:8936000-8939600	Weak transcription	Fetal Brain Male	brain
11	chr11:8936000-8942800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:8936200-8939200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:8936200-8945800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr11:8936400-8941800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr11:8936400-8946000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:8936400-8946800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:8936400-8951200	Weak transcription	Right Atrium	heart
18	chr11:8936600-8940600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:8936600-8940800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:8936600-8941400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr11:8936600-8941600	Weak transcription	Ovary	ovary
22	chr11:8936600-8945000	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr11:8936600-8945800	Weak transcription	Stomach Mucosa	stomach
24	chr11:8936600-8946600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr11:8936600-8948600	Strong transcription	Fetal Thymus	thymus
26	chr11:8936600-8949000	Strong transcription	Fetal Stomach	stomach
27	chr11:8936600-8954000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:8936800-8939200	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:8936800-8940000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:8936800-8942200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr11:8936800-8947000	Strong transcription	Dnd41	blood
32	chr11:8936800-8947600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr11:8937000-8947600	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr11:8937000-8948200	Strong transcription	Fetal Brain Female	brain
35	chr11:8937200-8945000	Strong transcription	Brain Angular Gyrus	brain
36	chr11:8937200-8947400	Strong transcription	Thymus	Thymus
37	chr11:8937600-8944800	Strong transcription	Hela-S3	cervix
38	chr11:8937800-8939200	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr11:8937800-8939800	Genic enhancers	HMEC	breast
40	chr11:8937800-8940200	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr11:8937800-8940800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:8937800-8947400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:8938000-8939200	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:8938000-8939400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
45	chr11:8938000-8939400	Genic enhancers	NHEK	skin
46	chr11:8938000-8939800	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr11:8938000-8939800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:8938000-8939800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:8938000-8939800	Genic enhancers	Fetal Lung	lung
50	chr11:8938000-8940200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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