Variant report

Variant	rs79402483
Chromosome Location	chr11:47929730-47929731
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr11:47929709-47930157	GM12878	blood:	n/a	n/a
2	RUNX3	chr11:47929704-47930133	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000254780	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv530620	chr11:47765455-48664555	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
3	nsv1036992	chr11:47794621-48666024	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv897326	chr11:47891334-48035474	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1036451	chr11:47902321-48616646	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv541037	chr11:47902321-48616646	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv1047490	chr11:47916708-48388686	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv1044266	chr11:47929586-48276132	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv541038	chr11:47929586-48276132	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47922200-47930000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr11:47923600-47929800	Weak transcription	GM12878-XiMat	blood
3	chr11:47925600-47943200	Enhancers	Placenta	Placenta
4	chr11:47927200-47942800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:47927800-47935000	Weak transcription	K562	blood
6	chr11:47927800-47936600	Weak transcription	Thymus	Thymus
7	chr11:47928000-47929800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:47928200-47936800	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:47928400-47929800	Weak transcription	HUVEC	blood vessel
10	chr11:47928600-47930200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr11:47928600-47930600	Enhancers	NHDF-Ad	bronchial
12	chr11:47928600-47930600	Enhancers	Osteobl	bone
13	chr11:47929000-47930400	Enhancers	Primary B cells from peripheral blood	blood
14	chr11:47929000-47935600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:47929200-47929800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:47929200-47930200	Enhancers	Spleen	Spleen
17	chr11:47929200-47930400	Enhancers	Fetal Intestine Small	intestine
18	chr11:47929200-47930400	Enhancers	Hela-S3	cervix
19	chr11:47929200-47931600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr11:47929400-47930000	Weak transcription	HSMMtube	muscle
21	chr11:47929400-47930200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:47929400-47930800	Enhancers	Primary B cells from cord blood	blood
23	chr11:47929600-47929800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:47929600-47929800	Enhancers	Fetal Muscle Trunk	muscle
25	chr11:47929600-47929800	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr11:47929600-47930000	Weak transcription	Pancreas	Pancrea
27	chr11:47929600-47930000	Weak transcription	HSMM	muscle
28	chr11:47929600-47930200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:47929600-47930200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:47929600-47930200	Enhancers	Adipose Nuclei	Adipose
31	chr11:47929600-47930200	Enhancers	Lung	lung
32	chr11:47929600-47930400	Enhancers	Fetal Intestine Large	intestine
33	chr11:47929600-47931600	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr11:47929600-47932400	Enhancers	Primary monocytes fromperipheralblood	blood

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