Variant report

Variant	rs7940603
Chromosome Location	chr11:75304909-75304910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75301994..75305996-chr11:75306128..75308913,4	MCF-7	breast:
2	chr11:75303810..75306638-chr11:75313852..75316089,2	MCF-7	breast:
3	chr11:75302403..75305130-chr11:75308295..75310796,2	K562	blood:
4	chr11:75294151..75295686-chr11:75303881..75305618,2	MCF-7	breast:
5	chr11:75272932..75274966-chr11:75302540..75305496,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255326	Chromatin interaction
ENSG00000171533	Chromatin interaction
ENSG00000149257	Chromatin interaction
ENSG00000255434	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11821219	1.00[EUR][1000 genomes]
rs12287188	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134125	1.00[EUR][1000 genomes]
rs57096650	1.00[EUR][1000 genomes]
rs73504507	1.00[EUR][1000 genomes]
rs7924333	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75295400-75329600	Weak transcription	Aorta	Aorta
2	chr11:75295600-75310800	Weak transcription	Right Atrium	heart
3	chr11:75295600-75314200	Weak transcription	Lung	lung
4	chr11:75295800-75316400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:75296600-75305800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:75296600-75321000	Weak transcription	Ovary	ovary
7	chr11:75297000-75305200	Weak transcription	Spleen	Spleen
8	chr11:75301600-75313800	Weak transcription	Fetal Lung	lung
9	chr11:75302200-75305400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:75302200-75306800	Enhancers	Fetal Muscle Leg	muscle
11	chr11:75302400-75305000	Enhancers	Pancreas	Pancrea
12	chr11:75302400-75305200	Enhancers	HSMMtube	muscle
13	chr11:75302800-75312600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:75303200-75305400	Enhancers	Fetal Intestine Large	intestine
15	chr11:75303400-75305000	Weak transcription	K562	blood
16	chr11:75303600-75305400	Enhancers	Fetal Intestine Small	intestine
17	chr11:75303600-75305800	Weak transcription	Fetal Thymus	thymus
18	chr11:75303600-75306000	Enhancers	Brain Hippocampus Middle	brain
19	chr11:75303800-75305000	Enhancers	Adipose Nuclei	Adipose
20	chr11:75303800-75305000	Enhancers	Duodenum Mucosa	Duodenum
21	chr11:75303800-75305600	Enhancers	Brain Angular Gyrus	brain
22	chr11:75303800-75305800	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr11:75303800-75306600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:75303800-75306800	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr11:75303800-75307000	Enhancers	Brain Anterior Caudate	brain
26	chr11:75304000-75305200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:75304000-75305800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:75304000-75305800	Enhancers	Brain Cingulate Gyrus	brain
29	chr11:75304000-75306000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:75304000-75306000	Enhancers	Brain Substantia Nigra	brain
31	chr11:75304000-75306200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:75304000-75306200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:75304000-75306400	Enhancers	Fetal Stomach	stomach
34	chr11:75304200-75305400	Enhancers	Colon Smooth Muscle	Colon
35	chr11:75304200-75305800	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr11:75304200-75306200	Weak transcription	Fetal Muscle Trunk	muscle
37	chr11:75304400-75306600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr11:75304400-75306800	Enhancers	Brain Germinal Matrix	brain
39	chr11:75304600-75305600	Enhancers	Fetal Brain Female	brain
40	chr11:75304600-75306400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:75304800-75305600	Enhancers	Fetal Brain Male	brain
42	chr11:75304800-75306000	Weak transcription	Fetal Heart	heart
43	chr11:75304800-75306000	Enhancers	Rectal Smooth Muscle	rectum
44	chr11:75304800-75309200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links