Variant report

Variant	rs7940637
Chromosome Location	chr11:86495697-86495698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6592315	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs7123349	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86487400-86501400	Weak transcription	Ovary	ovary
2	chr11:86491800-86496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:86492600-86495800	Enhancers	Fetal Intestine Small	intestine
4	chr11:86493000-86502200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:86493600-86496600	Enhancers	Fetal Lung	lung
6	chr11:86493800-86497000	Enhancers	Hela-S3	cervix
7	chr11:86494000-86496400	Weak transcription	HSMM	muscle
8	chr11:86494400-86497000	Enhancers	Colon Smooth Muscle	Colon
9	chr11:86494400-86497800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:86494600-86495800	Enhancers	Rectal Smooth Muscle	rectum
11	chr11:86494800-86496600	Enhancers	NHEK	skin
12	chr11:86494800-86497200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:86495000-86495800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:86495000-86495800	Enhancers	Fetal Intestine Large	intestine
15	chr11:86495000-86495800	Enhancers	Fetal Kidney	kidney
16	chr11:86495000-86496600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:86495000-86496600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:86495000-86496800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:86495200-86495800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:86495200-86496000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:86495200-86496000	Enhancers	Fetal Muscle Leg	muscle
22	chr11:86495200-86497200	Enhancers	HSMMtube	muscle
23	chr11:86495200-86497200	Enhancers	NHDF-Ad	bronchial
24	chr11:86495200-86497200	Enhancers	Osteobl	bone
25	chr11:86495400-86496000	Enhancers	Fetal Muscle Trunk	muscle
26	chr11:86495400-86497200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr11:86495400-86510400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:86495600-86501000	Weak transcription	A549	lung

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