Variant report

Variant	rs7941413
Chromosome Location	chr11:10469454-10469455
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:10469290-10469588	HepG2	liver:	n/a	chr11:10469415-10469426
2	CEBPB	chr11:10469327-10469560	A549	lung:	n/a	chr11:10469415-10469426
3	CEBPB	chr11:10469305-10469512	IMR90	lung:	n/a	chr11:10469415-10469426
4	CEBPB	chr11:10469308-10469561	Hela-S3	cervix:	n/a	chr11:10469415-10469426
5	MAX	chr11:10469313-10469516	NB4	blood:	n/a	chr11:10469456-10469466
6	MYC	chr11:10469320-10469511	NB4	blood:	n/a	chr11:10469456-10469466
7	CEBPB	chr11:10469338-10469518	K562	blood:	n/a	chr11:10469415-10469426
8	CEBPB	chr11:10469256-10469605	K562	blood:	n/a	chr11:10469415-10469426
9	CEBPB	chr11:10469309-10469580	K562	blood:	n/a	chr11:10469415-10469426

No.	Distal block	Cell Line	Cell type
1	chr11:10466009..10469840-chr11:10470987..10473326,3	MCF-7	breast:
2	chr11:10467512..10469886-chr11:10470093..10472685,2	K562	blood:
3	chr11:10469398..10472547-chr11:10473380..10477623,4	K562	blood:

Variant related genes	Relation type
AMPD3	TF binding region
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73407718	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3475409	chr11:10464338-10470458	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3475420	chr11:10464352-10470454	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10457600-10471800	Weak transcription	NHDF-Ad	bronchial
2	chr11:10464000-10471000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr11:10464000-10471000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:10464600-10471600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:10465400-10471000	Weak transcription	Primary B cells from cord blood	blood
6	chr11:10465600-10472000	Weak transcription	Right Atrium	heart
7	chr11:10466600-10471400	Weak transcription	Spleen	Spleen
8	chr11:10466800-10471200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:10467000-10471200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:10467000-10471200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:10467200-10471200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr11:10467200-10471800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:10467400-10471000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr11:10467400-10471000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:10467400-10471000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr11:10467400-10471200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr11:10467400-10471400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr11:10467400-10471600	Weak transcription	Adipose Nuclei	Adipose
19	chr11:10467600-10471000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr11:10467600-10471000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr11:10467600-10471000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr11:10467600-10471200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:10467600-10471200	Weak transcription	Fetal Thymus	thymus
24	chr11:10469000-10469800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr11:10469200-10471000	Weak transcription	Primary T cells from cord blood	blood
26	chr11:10469200-10471200	Enhancers	Primary neutrophils fromperipheralblood	blood

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