Variant report

Variant	rs7941600
Chromosome Location	chr11:9280284-9280285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9278298..9280527-chr11:9313092..9315469,2	K562	blood:
2	chr11:9280283..9284052-chr11:9480147..9483704,4	K562	blood:
3	chr11:9280208..9281989-chr11:9282127..9285333,4	K562	blood:
4	chr11:9280208..9283661-chr11:9285464..9288886,5	K562	blood:

Variant related genes	Relation type
ENSG00000184014	Chromatin interaction
ENSG00000268403	Chromatin interaction
ENSG00000166478	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10840202	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11042273	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11828205	0.84[ASN][1000 genomes]
rs12287120	0.88[ASN][1000 genomes]
rs12292589	0.82[AMR][1000 genomes]
rs4537761	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4627080	0.83[ASN][1000 genomes]
rs59246353	0.81[ASN][1000 genomes]
rs61875675	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61875692	0.81[ASN][1000 genomes]
rs7103596	0.83[ASN][1000 genomes]
rs7925801	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv1053045	chr11:9208881-9363488	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv540947	chr11:9208881-9363488	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
8	nsv515891	chr11:9275898-9334961	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9253000-9285600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:9254400-9280600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:9257000-9284800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:9257200-9285600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:9261800-9285600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:9262400-9282400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:9264000-9283400	Weak transcription	Fetal Lung	lung
8	chr11:9264000-9284600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:9264200-9285400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:9265600-9284600	Weak transcription	Brain Germinal Matrix	brain
11	chr11:9267800-9285600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:9270200-9282000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:9270200-9284800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:9272000-9282000	Weak transcription	NHDF-Ad	bronchial
15	chr11:9272000-9284600	Weak transcription	Fetal Brain Female	brain
16	chr11:9272000-9285400	Weak transcription	HSMMtube	muscle
17	chr11:9272200-9281600	Weak transcription	Hela-S3	cervix
18	chr11:9272200-9281600	Weak transcription	Osteobl	bone
19	chr11:9272400-9281600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:9272400-9282000	Weak transcription	NHLF	lung
21	chr11:9272400-9282800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:9272600-9281200	Weak transcription	Right Ventricle	heart
23	chr11:9272600-9281400	Weak transcription	Ovary	ovary
24	chr11:9272600-9281400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:9272600-9285600	Weak transcription	Small Intestine	intestine
26	chr11:9273200-9282600	Weak transcription	Thymus	Thymus
27	chr11:9273200-9285400	Weak transcription	K562	blood
28	chr11:9273400-9281200	Weak transcription	Primary B cells from cord blood	blood
29	chr11:9274600-9285400	Weak transcription	Fetal Intestine Large	intestine
30	chr11:9274800-9282000	Weak transcription	HepG2	liver
31	chr11:9274800-9283400	Weak transcription	Placenta	Placenta
32	chr11:9275000-9281600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:9275000-9282800	Weak transcription	NH-A	brain
34	chr11:9275200-9282400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:9275200-9285400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:9275400-9281200	Weak transcription	Adipose Nuclei	Adipose
37	chr11:9275400-9281200	Weak transcription	Left Ventricle	heart
38	chr11:9275400-9281600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr11:9275400-9281800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr11:9275400-9281800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:9275400-9282000	Weak transcription	Spleen	Spleen
42	chr11:9275400-9282400	Weak transcription	Fetal Thymus	thymus
43	chr11:9275400-9282600	Weak transcription	Lung	lung
44	chr11:9276200-9281200	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr11:9276200-9281200	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr11:9276400-9281400	Weak transcription	Primary T cells from cord blood	blood
47	chr11:9276400-9281600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr11:9276400-9282000	Weak transcription	HUVEC	blood vessel
49	chr11:9277000-9281800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr11:9277000-9281800	Weak transcription	Monocytes-CD14+_RO01746	blood

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