Variant report

Variant	rs7941932
Chromosome Location	chr11:34886006-34886007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34878119..34880348-chr11:34884856..34886591,2	K562	blood:
2	chr11:34618804..34621129-chr11:34885676..34887484,2	K562	blood:
3	chr11:34880661..34882510-chr11:34884203..34886582,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10488807	1.00[AMR][1000 genomes]
rs16926653	0.89[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16926689	0.83[AMR][1000 genomes]
rs16926697	0.83[AMR][1000 genomes]
rs34582941	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6484744	1.00[AMR][1000 genomes]
rs6484745	1.00[AMR][1000 genomes]
rs6484747	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7104984	0.86[YRI][hapmap]
rs7105901	1.00[AMR][1000 genomes]
rs7106038	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7109473	1.00[AMR][1000 genomes]
rs7109857	1.00[AMR][1000 genomes]
rs7117023	1.00[AMR][1000 genomes]
rs7117719	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs7121982	1.00[AMR][1000 genomes]
rs7123595	1.00[AMR][1000 genomes]
rs7123633	1.00[AMR][1000 genomes]
rs7126300	1.00[AMR][1000 genomes]
rs7126403	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7936015	1.00[AMR][1000 genomes]
rs7947018	0.83[AMR][1000 genomes]
rs9666748	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34859000-34909400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:34872200-34886600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:34876600-34896000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:34877400-34886400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:34877600-34906400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:34878200-34891400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:34880200-34898000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:34882000-34919800	Weak transcription	Left Ventricle	heart
9	chr11:34882400-34886600	Weak transcription	Esophagus	oesophagus
10	chr11:34882400-34886800	Weak transcription	Adipose Nuclei	Adipose
11	chr11:34885000-34896400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:34885400-34888600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr11:34885600-34886400	Enhancers	Primary B cells from cord blood	blood
14	chr11:34885600-34887000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr11:34885600-34888200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr11:34885600-34888600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr11:34885800-34886400	Enhancers	Primary hematopoietic stem cells	blood
18	chr11:34885800-34886600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:34886000-34903200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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