Variant report

Variant	rs7942233
Chromosome Location	chr11:93113594-93113595
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:93113062-93113619	MCF10A-Er-Src	breast:	n/a	chr11:93113391-93113400 chr11:93113488-93113497 chr11:93113391-93113401 chr11:93113391-93113401 chr11:93113393-93113400
2	FOS	chr11:93113079-93113637	MCF10A-Er-Src	breast:	n/a	chr11:93113391-93113400 chr11:93113488-93113497 chr11:93113391-93113401 chr11:93113391-93113401 chr11:93113393-93113400
3	FOS	chr11:93113049-93113640	MCF10A-Er-Src	breast:	n/a	chr11:93113391-93113400 chr11:93113488-93113497 chr11:93113391-93113401 chr11:93113391-93113401 chr11:93113393-93113400
4	FOS	chr11:93113043-93113640	MCF10A-Er-Src	breast:	n/a	chr11:93113391-93113400 chr11:93113488-93113497 chr11:93113391-93113401 chr11:93113391-93113401 chr11:93113393-93113400
5	POLR2A	chr11:93112592-93114606	K562	blood:	n/a	n/a

Variant related genes	Relation type
CCDC67	TF binding region

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10831032	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10831033	0.92[EUR][1000 genomes]
rs11020286	0.87[EUR][1000 genomes]
rs11020288	0.87[EUR][1000 genomes]
rs11020289	0.80[EUR][1000 genomes]
rs11020290	0.87[EUR][1000 genomes]
rs11020296	0.87[EUR][1000 genomes]
rs11020298	0.94[EUR][1000 genomes]
rs11020301	0.94[EUR][1000 genomes]
rs11020303	0.92[EUR][1000 genomes]
rs11020304	0.92[EUR][1000 genomes]
rs11020305	0.92[EUR][1000 genomes]
rs11020306	0.92[EUR][1000 genomes]
rs11020309	0.92[EUR][1000 genomes]
rs11020311	0.92[EUR][1000 genomes]
rs11020313	0.92[EUR][1000 genomes]
rs11020314	0.92[EUR][1000 genomes]
rs11020315	0.85[EUR][1000 genomes]
rs11020316	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11499629	0.86[EUR][1000 genomes]
rs12270883	0.88[EUR][1000 genomes]
rs12271156	0.87[EUR][1000 genomes]
rs12271165	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12272610	0.87[EUR][1000 genomes]
rs12272743	0.86[EUR][1000 genomes]
rs12273033	0.86[EUR][1000 genomes]
rs12275682	0.87[EUR][1000 genomes]
rs12276463	0.94[EUR][1000 genomes]
rs12276820	0.94[EUR][1000 genomes]
rs12277362	0.87[EUR][1000 genomes]
rs12280126	0.94[EUR][1000 genomes]
rs12281237	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12281366	0.87[EUR][1000 genomes]
rs12282377	0.87[EUR][1000 genomes]
rs12282978	0.87[EUR][1000 genomes]
rs12283039	0.87[EUR][1000 genomes]
rs12283758	0.94[EUR][1000 genomes]
rs12284477	0.92[EUR][1000 genomes]
rs12284622	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12284681	0.94[EUR][1000 genomes]
rs12285123	0.94[EUR][1000 genomes]
rs12285128	0.94[EUR][1000 genomes]
rs12286273	0.94[EUR][1000 genomes]
rs12286814	0.92[EUR][1000 genomes]
rs12287849	0.92[EUR][1000 genomes]
rs12288325	0.87[EUR][1000 genomes]
rs12289685	0.92[EUR][1000 genomes]
rs12289847	0.92[EUR][1000 genomes]
rs12291268	0.87[EUR][1000 genomes]
rs12292127	0.86[EUR][1000 genomes]
rs12292451	0.92[EUR][1000 genomes]
rs12292876	0.94[EUR][1000 genomes]
rs12293300	0.87[EUR][1000 genomes]
rs12293344	0.92[EUR][1000 genomes]
rs12294288	0.87[EUR][1000 genomes]
rs12295907	0.87[EUR][1000 genomes]
rs12295955	0.87[EUR][1000 genomes]
rs1456236	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1960666	0.86[EUR][1000 genomes]
rs2124560	0.87[EUR][1000 genomes]
rs2124561	0.87[EUR][1000 genomes]
rs2895469	0.88[EUR][1000 genomes]
rs57942067	0.92[EUR][1000 genomes]
rs60727319	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61919177	0.87[EUR][1000 genomes]
rs61919178	0.87[EUR][1000 genomes]
rs61919180	0.93[EUR][1000 genomes]
rs72972371	0.91[EUR][1000 genomes]
rs7949734	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7949990	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs977255	0.87[EUR][1000 genomes]
rs977256	0.86[EUR][1000 genomes]
rs9804603	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv468793	chr11:93068163-93129893	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93106200-93117200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:93106400-93116600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:93111200-93128200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:93111400-93116400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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