Variant report

Variant	rs7942602
Chromosome Location	chr11:16608004-16608005
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56085573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6486308	1.00[AMR][1000 genomes]
rs6486309	1.00[AMR][1000 genomes]
rs7102533	1.00[AMR][1000 genomes]
rs7111319	1.00[AMR][1000 genomes]
rs7120884	1.00[AMR][1000 genomes]
rs72861256	1.00[AMR][1000 genomes]
rs7480604	1.00[AMR][1000 genomes]
rs7932345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16595200-16608200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16595400-16609200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:16598600-16609200	Weak transcription	Left Ventricle	heart
4	chr11:16603200-16609400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:16603400-16609200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:16606400-16608600	Weak transcription	Brain Germinal Matrix	brain
7	chr11:16606400-16609400	Weak transcription	Right Atrium	heart
8	chr11:16606600-16609400	Weak transcription	Psoas Muscle	Psoas
9	chr11:16606800-16608200	Weak transcription	Fetal Heart	heart
10	chr11:16606800-16608400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:16608000-16621600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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