Variant report

Variant	rs7943346
Chromosome Location	chr11:86742369-86742370
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86741218..86743533-chr11:86749277..86751879,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10466732	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10751146	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10792898	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10792899	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12790462	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1378879	0.88[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs1531146	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs1551503	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1963952	0.82[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1968740	0.81[EUR][1000 genomes]
rs1968742	0.80[EUR][1000 genomes]
rs2001411	0.88[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs2034848	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2077594	0.82[EUR][1000 genomes]
rs2445535	0.82[EUR][1000 genomes]
rs2445575	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2445586	0.83[CEU][hapmap];0.85[CHB][hapmap];0.83[EUR][1000 genomes]
rs2445589	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2512330	0.84[EUR][1000 genomes]
rs2512332	0.84[EUR][1000 genomes]
rs2512356	0.83[CEU][hapmap];0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs2512357	0.82[EUR][1000 genomes]
rs2512358	0.82[CEU][hapmap];0.83[CHB][hapmap];0.80[JPT][hapmap];0.80[EUR][1000 genomes]
rs2512365	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2512367	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2512389	0.81[EUR][1000 genomes]
rs2512396	0.88[CEU][hapmap];0.85[CHB][hapmap]
rs2512485	0.89[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs2512499	0.82[EUR][1000 genomes]
rs2513210	0.82[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap]
rs2513212	0.83[EUR][1000 genomes]
rs2513214	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2513215	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2513216	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2513218	0.82[EUR][1000 genomes]
rs2513224	0.80[EUR][1000 genomes]
rs2513228	0.88[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs2513233	0.82[EUR][1000 genomes]
rs2513239	0.80[EUR][1000 genomes]
rs2513240	0.82[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.81[EUR][1000 genomes]
rs3133317	0.83[EUR][1000 genomes]
rs3133361	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4245428	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4245430	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4943971	0.88[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs4944662	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71460024	0.83[AMR][1000 genomes]
rs7927570	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7943307	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943831	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7949018	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs921873	0.83[AMR][1000 genomes]
rs991773	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86731800-86748200	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:86735800-86748200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:86740600-86742600	Enhancers	HepG2	liver
4	chr11:86740600-86747600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:86740800-86747600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:86741000-86748000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:86741400-86742800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:86741600-86742400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:86741800-86742400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:86742000-86742400	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr11:86742000-86746800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:86742000-86747000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr11:86742000-86747200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:86742000-86748000	Weak transcription	HMEC	breast
15	chr11:86742000-86748200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:86742000-86748200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:86742000-86748200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr11:86742200-86742400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr11:86742200-86742400	Enhancers	K562	blood
20	chr11:86742200-86743000	Enhancers	Colon Smooth Muscle	Colon
21	chr11:86742200-86743000	Enhancers	Hela-S3	cervix
22	chr11:86742200-86744800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:86742200-86747000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:86742200-86747600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr11:86742200-86748000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr11:86742200-86748000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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