Variant report

Variant	rs7943778
Chromosome Location	chr11:77189113-77189114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr11:77188829-77189153	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
PAK1	TF binding region

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10899376	0.84[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs10899378	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899379	0.85[EUR][1000 genomes]
rs11237173	0.84[EUR][1000 genomes]
rs11237189	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11237193	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11237195	0.94[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11237196	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11237199	0.96[CEU][hapmap];0.92[CHB][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271542	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12286502	0.86[EUR][1000 genomes]
rs1377470	0.81[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes]
rs1377471	0.83[EUR][1000 genomes]
rs1453343	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs1670460	1.00[YRI][hapmap]
rs1793466	1.00[YRI][hapmap]
rs1840151	0.85[EUR][1000 genomes]
rs2250639	0.84[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs2250647	0.83[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs2298793	0.83[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs2602458	0.85[EUR][1000 genomes]
rs2602459	0.82[EUR][1000 genomes]
rs2602464	0.84[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs2602465	0.82[EUR][1000 genomes]
rs2602468	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2602469	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2602470	0.83[EUR][1000 genomes]
rs2602472	0.81[EUR][1000 genomes]
rs2602477	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2602479	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2602488	0.82[JPT][hapmap]
rs2725810	0.82[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2725816	0.84[EUR][1000 genomes]
rs2725827	0.84[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs2725830	0.85[EUR][1000 genomes]
rs2725831	0.83[EUR][1000 genomes]
rs2725832	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2729747	0.81[EUR][1000 genomes]
rs2844328	0.87[EUR][1000 genomes]
rs2844332	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2844334	0.83[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2844337	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs2852384	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2852385	1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs2852392	0.81[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2852394	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2853086	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2853087	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2853088	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2853090	0.84[EUR][1000 genomes]
rs2853103	0.82[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs4590893	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56015509	0.85[AFR][1000 genomes]
rs7109645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119033	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77185800-77190200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:77185800-77190200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:77186000-77190200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:77186000-77190200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:77186000-77190200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:77186000-77190200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:77186000-77190200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:77186000-77190800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:77187600-77190000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:77187600-77190400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr11:77187800-77190200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:77187800-77190200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:77187800-77190200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:77187800-77190200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:77188400-77189400	Enhancers	HepG2	liver

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