Variant report

Variant	rs7943876
Chromosome Location	chr11:63455139-63455140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63439157..63441385-chr11:63453594..63455279,2	MCF-7	breast:
2	chr11:63447764..63451579-chr11:63451770..63456201,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133318	Chromatin interaction
ENSG00000184743	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1209072	1.00[ASN][1000 genomes]
rs12791482	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12797102	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs224170	1.00[ASN][1000 genomes]
rs72930190	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7943876	HRASLS3	cis	multi-tissue	Pritchard

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63449600-63455600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr11:63450400-63455200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:63450400-63456000	Weak transcription	Placenta	Placenta
4	chr11:63450400-63466400	Weak transcription	Small Intestine	intestine
5	chr11:63450600-63469200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:63450800-63460400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:63450800-63465400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:63450800-63465800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:63450800-63517400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:63451000-63466800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:63451000-63466800	Weak transcription	Stomach Mucosa	stomach
12	chr11:63451000-63467000	Weak transcription	Thymus	Thymus
13	chr11:63451200-63466400	Weak transcription	Fetal Intestine Large	intestine
14	chr11:63451200-63466800	Weak transcription	Fetal Kidney	kidney
15	chr11:63451200-63475000	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr11:63451200-63478000	Weak transcription	HSMM	muscle
17	chr11:63451200-63486400	Weak transcription	Primary T cells from cord blood	blood
18	chr11:63451400-63455400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:63451400-63455400	Weak transcription	NHLF	lung
20	chr11:63451400-63455800	Enhancers	Fetal Brain Male	brain
21	chr11:63451400-63456400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:63451400-63457000	Weak transcription	HUVEC	blood vessel
23	chr11:63451400-63466800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr11:63451400-63478000	Weak transcription	HSMMtube	muscle
25	chr11:63451600-63455800	Enhancers	Adipose Nuclei	Adipose
26	chr11:63452000-63455400	Enhancers	Brain Germinal Matrix	brain
27	chr11:63452000-63486400	Weak transcription	Fetal Thymus	thymus
28	chr11:63452200-63455600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:63452200-63455600	Genic enhancers	Dnd41	blood
30	chr11:63452200-63456600	Weak transcription	HepG2	liver
31	chr11:63452400-63455800	Enhancers	Brain Substantia Nigra	brain
32	chr11:63452400-63458000	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr11:63452600-63469000	Weak transcription	Left Ventricle	heart
34	chr11:63452800-63455200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr11:63452800-63456800	Enhancers	K562	blood
36	chr11:63452800-63459400	Weak transcription	Fetal Stomach	stomach
37	chr11:63452800-63465400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr11:63452800-63466800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:63452800-63466800	Weak transcription	Lung	lung
40	chr11:63452800-63469000	Weak transcription	Fetal Intestine Small	intestine
41	chr11:63453000-63456000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:63453000-63459200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr11:63453000-63472800	Weak transcription	Pancreas	Pancrea
44	chr11:63453200-63456600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:63453200-63457800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:63453200-63466800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:63453400-63467000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:63453400-63471800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:63453600-63455200	Weak transcription	Hela-S3	cervix
50	chr11:63453600-63455400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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