Variant report

Variant	rs7944051
Chromosome Location	chr11:62655818-62655819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:62655359..62658338-chr11:62686047..62688444,2	K562	blood:
2	chr11:62654873..62656634-chr11:62689160..62691851,2	MCF-7	breast:
3	chr11:62553141..62555419-chr11:62655397..62661476,6	K562	blood:
4	chr11:62370304..62373223-chr11:62654610..62657267,2	K562	blood:
5	chr11:62614063..62631836-chr11:62641578..62658963,131	K562	blood:
6	chr11:62597102..62625754-chr11:62640222..62672995,305	MCF-7	breast:
7	chr11:62492533..62495700-chr11:62653873..62657613,5	K562	blood:
8	chr11:62596557..62612020-chr11:62639561..62665043,131	K562	blood:

No data

Variant related genes	Relation type
ENSG00000162222	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000234857	Chromatin interaction
ENSG00000149499	Chromatin interaction
ENSG00000162236	Chromatin interaction
ENSG00000255717	Chromatin interaction
ENSG00000168539	Chromatin interaction
ENSG00000214753	Chromatin interaction
ENSG00000168003	Chromatin interaction
ENSG00000185475	Chromatin interaction
ENSG00000269176	Chromatin interaction
ENSG00000256690	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11568630	1.00[ASW][hapmap]
rs7104017	1.00[AMR][1000 genomes]
rs755246	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915636	chr11:62016992-62713565	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1441 gene(s)	inside rSNPs	diseases
2	nsv532283	chr11:62201358-62863475	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1433 gene(s)	inside rSNPs	diseases
3	nsv1051308	chr11:62564713-62673136	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1199 gene(s)	inside rSNPs	diseases
4	nsv541058	chr11:62564713-62673136	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1199 gene(s)	inside rSNPs	diseases
5	nsv1041770	chr11:62610353-62871767	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	263 gene(s)	inside rSNPs	diseases
6	esv34011	chr11:62652779-62993702	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:62649200-62657600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:62650000-62656400	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
3	chr11:62650200-62657600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:62650400-62657800	Strong transcription	H9 Cell Line	embryonic stem cell
5	chr11:62650600-62657200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:62650600-62657600	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:62650800-62657200	Strong transcription	Primary B cells from cord blood	blood
8	chr11:62651000-62657200	Strong transcription	Aorta	Aorta
9	chr11:62651000-62657400	Strong transcription	Primary hematopoietic stem cells	blood
10	chr11:62651000-62657800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr11:62651200-62657000	Strong transcription	Fetal Lung	lung
12	chr11:62651400-62656000	Strong transcription	Small Intestine	intestine
13	chr11:62651400-62657000	Strong transcription	Ovary	ovary
14	chr11:62651400-62657600	Strong transcription	Thymus	Thymus
15	chr11:62651400-62657800	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:62651400-62657800	Strong transcription	Primary B cells from peripheral blood	blood
17	chr11:62651400-62657800	Strong transcription	Esophagus	oesophagus
18	chr11:62651400-62657800	Strong transcription	Fetal Thymus	thymus
19	chr11:62651600-62656800	Genic enhancers	Duodenum Mucosa	Duodenum
20	chr11:62651600-62657200	Strong transcription	Liver	Liver
21	chr11:62651600-62657200	Strong transcription	Rectal Smooth Muscle	rectum
22	chr11:62651600-62657600	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr11:62651600-62657800	Strong transcription	Primary T cells from cord blood	blood
24	chr11:62651600-62657800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr11:62651800-62656000	Strong transcription	Spleen	Spleen
26	chr11:62651800-62656400	Weak transcription	Fetal Heart	heart
27	chr11:62651800-62656600	Strong transcription	Adipose Nuclei	Adipose
28	chr11:62651800-62656800	Strong transcription	Left Ventricle	heart
29	chr11:62651800-62656800	Weak transcription	Right Atrium	heart
30	chr11:62651800-62657000	Strong transcription	Fetal Muscle Leg	muscle
31	chr11:62651800-62657600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr11:62651800-62657600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr11:62651800-62657600	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr11:62651800-62657800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:62651800-62657800	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr11:62651800-62658600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr11:62651800-62667400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr11:62652000-62656000	Strong transcription	Colonic Mucosa	Colon
39	chr11:62652000-62656000	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr11:62652000-62656200	Strong transcription	HSMMtube	muscle
41	chr11:62652000-62657000	Strong transcription	Colon Smooth Muscle	Colon
42	chr11:62652000-62657000	Genic enhancers	HepG2	liver
43	chr11:62652000-62657200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr11:62652000-62657200	Genic enhancers	Placenta	Placenta
45	chr11:62652200-62656600	Strong transcription	Psoas Muscle	Psoas
46	chr11:62652200-62656600	Genic enhancers	K562	blood
47	chr11:62652200-62657200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:62652200-62657200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
49	chr11:62652200-62657600	Genic enhancers	Fetal Intestine Small	intestine
50	chr11:62652200-62657800	Strong transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links