Variant report

Variant	rs79444362
Chromosome Location	chr5:96451294-96451295
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv830412	chr5:96427305-96606619	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv830413	chr5:96450582-96509294	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96438600-96454800	Weak transcription	Brain Hippocampus Middle	brain
2	chr5:96442400-96460200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:96444200-96454000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr5:96446000-96453800	Weak transcription	Primary B cells from cord blood	blood
5	chr5:96447600-96454000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:96447800-96451600	Weak transcription	Brain Germinal Matrix	brain
7	chr5:96447800-96453200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:96448000-96459600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:96448000-96460000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:96448000-96465800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:96448800-96452400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:96448800-96453400	Weak transcription	Fetal Muscle Leg	muscle
13	chr5:96449000-96451600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:96449000-96454800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:96449000-96463400	Weak transcription	Brain Anterior Caudate	brain
16	chr5:96450200-96451400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:96450200-96452800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr5:96451000-96452200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr5:96451200-96451600	Flanking Active TSS	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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