Variant report

Variant	rs7946024
Chromosome Location	chr11:85917902-85917903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10792838	0.88[EUR][1000 genomes]
rs11234575	0.87[EUR][1000 genomes]
rs12799380	0.88[EUR][1000 genomes]
rs2374705	0.84[EUR][1000 genomes]
rs7122535	0.88[EUR][1000 genomes]
rs7123014	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7946024	C11orf73	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85908600-85920000	Weak transcription	Small Intestine	intestine
2	chr11:85914000-85918200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:85914000-85918600	Enhancers	Placenta	Placenta
4	chr11:85914000-85920800	Weak transcription	Ovary	ovary
5	chr11:85914000-85926200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:85914600-85919200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:85914800-85919400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr11:85915000-85919400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:85915000-85920000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:85917200-85928800	Weak transcription	Hela-S3	cervix
11	chr11:85917600-85918200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr11:85917800-85918200	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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