Variant report

Variant	rs7946086
Chromosome Location	chr11:32461090-32461091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SUZ12	chr11:32453725-32461544	NT2-D1	testis:	n/a	n/a
2	POLR2A	chr11:32461076-32462971	H1-neurons	neurons:	n/a	n/a
3	SUZ12	chr11:32459091-32461237	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr11:32459318-32464847	K562	blood:	n/a	n/a
5	POLR2A	chr11:32461057-32463017	H1-neurons	neurons:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32460248..32463699-chr11:32486018..32490383,4	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EIF3M-2	chr11:32459475-32461618	ENSG00000183242
2	lnc-EIF3M-2	chr11:32459391-32462950	ENSG00000183242
3	lnc-EIF3M-2	chr11:32459391-32461618	NONHSAT018663
4	lnc-EIF3M-2	chr11:32459391-32461620	NR_023920

No data

Variant related genes	Relation type
WT1	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11031783	0.83[AMR][1000 genomes]
rs11031784	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2301250	0.81[CEU][hapmap];0.86[GIH][hapmap]
rs3809060	0.81[CEU][hapmap];0.89[GIH][hapmap]
rs3809061	0.81[CEU][hapmap];0.86[GIH][hapmap]
rs3930513	0.81[CEU][hapmap];0.86[GIH][hapmap]
rs7110547	0.84[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1044547	chr11:32435753-32465233	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2753303	chr11:32447324-32494924	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1051559	chr11:32447347-32465233	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7946086	WT1AS	cis	cerebellum	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32457000-32462600	Bivalent/Poised TSS	Fetal Kidney	kidney
2	chr11:32458600-32461200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
3	chr11:32458600-32461200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:32459200-32461200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
5	chr11:32459600-32461200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:32459600-32461200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:32459600-32461200	Bivalent Enhancer	Adipose Nuclei	Adipose
8	chr11:32459800-32461400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr11:32460200-32461200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr11:32460200-32461600	Active TSS	Ovary	ovary
11	chr11:32460400-32461200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:32460600-32461200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr11:32460600-32461200	Bivalent Enhancer	Fetal Brain Male	brain
14	chr11:32460600-32461200	Bivalent Enhancer	Fetal Stomach	stomach
15	chr11:32460800-32461200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:32460800-32461200	Bivalent Enhancer	Colon Smooth Muscle	Colon
17	chr11:32460800-32461200	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
18	chr11:32460800-32461200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
19	chr11:32460800-32461400	Bivalent Enhancer	Fetal Thymus	thymus
20	chr11:32460800-32461600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:32460800-32461600	Bivalent Enhancer	Fetal Muscle Leg	muscle
22	chr11:32461000-32461200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:32461000-32461200	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:32461000-32461200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:32461000-32461200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:32461000-32461400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
27	chr11:32461000-32461400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:32461000-32461400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
29	chr11:32461000-32461400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr11:32461000-32461600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
31	chr11:32461000-32463200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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