Variant report

Variant	rs7946105
Chromosome Location	chr11:18750165-18750166
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:18750140-18750290	GM12864	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18745653..18747287-chr11:18748846..18751758,2	K562	blood:
2	chr11:18718875..18721131-chr11:18748920..18750996,2	K562	blood:

Variant related genes	Relation type
IGSF22	TF binding region
ENSG00000151117	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv1046886	chr11:18547568-18781448	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv540956	chr11:18547568-18781448	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv897028	chr11:18714623-18770822	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv525192	chr11:18722791-18793360	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1047371	chr11:18731473-18763037	Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv525452	chr11:18735947-18802503	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18743800-18753800	Weak transcription	Right Atrium	heart
2	chr11:18744200-18753200	Weak transcription	Brain Angular Gyrus	brain
3	chr11:18744200-18753400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr11:18744200-18754200	Weak transcription	Fetal Brain Female	brain
5	chr11:18744200-18754400	Weak transcription	Brain Germinal Matrix	brain
6	chr11:18746400-18753400	Weak transcription	Brain Anterior Caudate	brain
7	chr11:18746400-18761000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:18746800-18750200	Enhancers	Fetal Muscle Trunk	muscle
9	chr11:18747800-18751200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:18748200-18774000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:18748800-18750200	Enhancers	Ovary	ovary
12	chr11:18749400-18750200	Enhancers	Fetal Thymus	thymus
13	chr11:18749400-18750400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:18749400-18753000	Weak transcription	Right Ventricle	heart
15	chr11:18749600-18752200	Weak transcription	GM12878-XiMat	blood
16	chr11:18749600-18752800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr11:18749600-18753200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr11:18749600-18754800	Weak transcription	Fetal Stomach	stomach
19	chr11:18749800-18752800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr11:18749800-18753000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:18749800-18753200	Weak transcription	Dnd41	blood
22	chr11:18749800-18753400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:18749800-18754400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:18750000-18750400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr11:18750000-18751200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:18750000-18753000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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