Variant report

Variant	rs7946201
Chromosome Location	chr11:18084878-18084879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11024457	0.91[AMR][1000 genomes]
rs12280934	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7935867	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7943884	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7946201	SERPINB10	trans	lymphoblastoid	seeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18070800-18102600	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:18081400-18100400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr11:18083200-18109000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:18083400-18102400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:18084600-18085200	Enhancers	Fetal Intestine Small	intestine
6	chr11:18084600-18085400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:18084800-18085000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr11:18084800-18085200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:18084800-18085200	Enhancers	Fetal Kidney	kidney
10	chr11:18084800-18085400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:18084800-18085400	Enhancers	Pancreas	Pancrea
12	chr11:18084800-18086600	Enhancers	Liver	Liver
13	chr11:18084800-18087800	Enhancers	Stomach Mucosa	stomach
14	chr11:18084800-18090200	Weak transcription	Primary T cells from cord blood	blood
15	chr11:18084800-18108400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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