Variant report
| Variant | rs7946254 |
|---|---|
| Chromosome Location | chr11:18815270-18815271 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:18808312..18810971-chr11:18815106..18817235,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs10832987 | 0.89[AFR][1000 genomes] |
| rs10832988 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10832989 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11024799 | 0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11024801 | 0.85[EUR][1000 genomes] |
| rs11024802 | 0.85[EUR][1000 genomes] |
| rs12225720 | 0.83[CHB][hapmap] |
| rs4077687 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7950455 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.81[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv553633 | chr11:18311701-19058451 | Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 144 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
